<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">AJPS</journal-id><journal-title-group><journal-title>American Journal of Plant Sciences</journal-title></journal-title-group><issn pub-type="epub">2158-2742</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ajps.2017.810167</article-id><article-id pub-id-type="publisher-id">AJPS-79120</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  Assessment of Genetic Diversity of Coffee Accessions in Rwanda and Its Implication for Coffee Breeding
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>B.</surname><given-names>P. Muvunyi</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>P.</surname><given-names>Y. K. Sallah</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>L.</surname><given-names>Dusengemungu</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Jiyu</surname><given-names>Zhang</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China</addr-line></aff><aff id="aff3"><addr-line>Lanzhou University of Technology, Lanzhou, China</addr-line></aff><aff id="aff2"><addr-line>Faculty of Agriculture, National University of Rwanda, Butare, Rwanda</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>muvunyi14@lzu.edu.cn(BPM)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>04</day><month>09</month><year>2017</year></pub-date><volume>08</volume><issue>10</issue><fpage>2461</fpage><lpage>2473</lpage><history><date date-type="received"><day>3,</day>	<month>August</month>	<year>2017</year></date><date date-type="rev-recd"><day>15,</day>	<month>September</month>	<year>2017</year>	</date><date date-type="accepted"><day>18,</day>	<month>September</month>	<year>2017</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Genetic variation is important in breeding programs because it determines the 
  amount of gain from selection. This study was conducted to determine the
   magnitude of genetic diversity in coffee (
  &lt;i&gt;
  Coffea
   
  Arabica&lt;/i&gt;
   L.) accessions for developing superior cultivars in Rwanda. Twenty-one coffee accessions
   
  established in 1990 in an un-replicated field experiment at the Rubona Experimental Station of the Rwanda Agriculture Board (RAB) located in the mid-altitude zone of Rwanda
  ,
   were used in the study. Data were recorded on three randomly selected trees on eight quantitative morphological traits in each accession in 2013. One-way analysis of variance (ANOVA) indicated highly significant (p
   
  &lt;
   
  0.01) differences among the accessions for number of primary branches, number of leaves per branch, number of cherries per internode and % coffee leaf rust disease rating; and significant (p
   
  &lt;
   
  0.05) for yield, but not for internode
   length, weight of 100 cherries, and number of internodes per branch. Multivariate analysis showed that the first three principal components contributed cumulatively to 78.3% of the total variation. The PCA biplot grouped all the accessions into three different clusters and one singleton. The first and second PCs accounted for 43
  %
   and 21%, respectively. Cluster I and II grouped accessions with valuable quantitative agronomic traits while accessions in cluster III exhibited poor agronomic performance. The highest inter cluster distance of 475 was observed between cluster I and II, and the highest intra-cluster distance (62) was in cluster II. The phenotypic markers provided a useful measure of genetic distances among the coffee accessions and identified potential donors for future breeding efforts.
 
</p></abstract><kwd-group><kwd>Coffee</kwd><kwd> Genetic Diversity</kwd><kwd> Morphological Markers</kwd><kwd> Breeding</kwd><kwd> Rwanda</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Coffee (Coffea Arabica L.) has for long decades been a top cash and export crop in Rwanda. Estimated 500,000 of small-holder farmers cultivate coffee (mainly arabica species) on a total land area of 33,000 ha. However, recently, the productivity in terms of superior quality and yield drastically declined, and this fundamentally stems from the continual widespread cultivation of aged coffee trees with poor adaptation to the current vagaries of climate change, and specifically, to the increasing outbreaks of pests and diseases [<xref ref-type="bibr" rid="scirp.79120-ref1">1</xref>] . For example, twenty-one introduced Coffee germplasm accessions grown at the Coffee experimental station of Rwanda Agricultural Board (RAB), on which this study has been conducted, were introduced from different world coffee collection centers, and represent the main cultivars grown in Rwanda from more than three decades ago. It is thus highly probable that their unsatisfactory performance derives from possible genetic erosion and a shift from their genetic identity due to unstable environments [<xref ref-type="bibr" rid="scirp.79120-ref1">1</xref>] .</p><p>Intriguingly, these germplasms remarkably exhibit different levels of sensitivity to various abiotic and biotic cues. Yet, the genetic grounds, degree and sources of this divergence remain unknown until now, as there is no extensive genetic diversity analysis responding to this issue that has previously been performed. Awareness of these variations may provide us with the necessary information for selecting the desired economic traits, such as resistance to pests and diseases, as previously stated by [<xref ref-type="bibr" rid="scirp.79120-ref2">2</xref>] . This knowledge is also cherished for a proper management and profitable use of germplasm in breeding programs [<xref ref-type="bibr" rid="scirp.79120-ref3">3</xref>] , and it is a pre-requisite for genotype selection [<xref ref-type="bibr" rid="scirp.79120-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref5">5</xref>] . In this view, the government is currently embarking on the rehabilitation project of these germplasm through which evaluating genetic divergence is one of the cornerstones for predicting the best parental lines to incorporate in the future improvement efforts.</p><p>Morphological, biochemical, molecular and physiological markers are some of the approaches to estimate genetic diversity among crop species [<xref ref-type="bibr" rid="scirp.79120-ref6">6</xref>] . Far more, morphological evaluation is recognized as the most widely used [<xref ref-type="bibr" rid="scirp.79120-ref7">7</xref>] , as it makes it possible to dissect differences among genotypes [<xref ref-type="bibr" rid="scirp.79120-ref8">8</xref>] with less cumbersome and sophisticated techniques, and more importantly, under the actual crop performance conditions. Morphological markers such as seed size and seed per pod and per plants have served to estimate genetic diversity among various plant germplasm [<xref ref-type="bibr" rid="scirp.79120-ref9">9</xref>] . However, results from these eye-guided indicators are more likely to get biased by environment as compared to other markers [<xref ref-type="bibr" rid="scirp.79120-ref10">10</xref>] . Else, morphological markers largely serve to estimate genetic variation in coffee germplasm [<xref ref-type="bibr" rid="scirp.79120-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref11">11</xref>] . [<xref ref-type="bibr" rid="scirp.79120-ref3">3</xref>] also reported of 49 coffee accessions in Ethiopia that significantly differed for the most of the traits studied. Also, [<xref ref-type="bibr" rid="scirp.79120-ref12">12</xref>] was able to detect significant genetic variations for the quantitative traits examined across germplasm cultivated in the Southwestern region of Saudi Arabia. Conversely, [<xref ref-type="bibr" rid="scirp.79120-ref11">11</xref>] studied the level of morphological variation between and within new and the existing coffee varieties in Kenya but observed fairly slim genetic variation among these varieties.</p><p>Briefly, this study aimed at quantifying the genetic diversity in coffee accessions in Rwanda as a basis for cultivar development and germplasm management in the country. We combined multivariate analysis; including hierarchical cluster analysis and principal component analysis to meet this bid.</p></sec><sec id="s2"><title>2. Materials and Methods</title><p>The study was carried out at the Rubona Experiment Station (latitude 2˚29'S, longitude 29˚46'E, 1650 masl) of the Rwanda Agriculture Board located in Huye District in the Southern Province of Rwanda from October 2012 to April 2013. A total of 21 coffee accessions established in an un-replicated trial in 1990 were used in the study. The accessions comprised 14 introductions from the Democratic Republic of Congo, four from Ethiopia and three from Kenya (<xref ref-type="table" rid="table1">Table 1</xref>). These accessions were selected from a total of 183 based on their higher yield potential and widespread use in Rwanda. Quantitative data were collected from 3 coffee trees selected randomly from each accession on number of primary branches, number of internodes per branch, number of leaves per branch, internode length, number of cherries per internode, weight of 100 cherries, number of coffee trees attacked by coffee leaf rust, and yield per tree.</p><p>All statistical analyses were performed using GenStat (2007) [<xref ref-type="bibr" rid="scirp.79120-ref13">13</xref>] Discovery Edition 3.0 statistical software and SPSS (2009) version 16 software [<xref ref-type="bibr" rid="scirp.79120-ref14">14</xref>] . Analysis of variance (ANOVA) was computed using the general linear model in GenStat, assuming accession effects were random.</p><p>Means for each of eight morphological traits assessed were separated by the least significant difference (LSD) at p = 0.05 as suggested by [<xref ref-type="bibr" rid="scirp.79120-ref15">15</xref>] . Phenotypic correlation coefficients were also computed to examine the degree of association among these traits. Principal component analysis of the evaluated accessions was performed according to [<xref ref-type="bibr" rid="scirp.79120-ref16">16</xref>] . Also, genetic distance based on phenotypic characters for all pair-wise comparisons of 21 coffee accessions was determined according to the average intra cluster distance as stated by [<xref ref-type="bibr" rid="scirp.79120-ref17">17</xref>] in the following formula:</p><p>D 2 = ∑ D 2 i N</p><p>Where, D<sup>2</sup>i = Sum of distances between all possible combinations of accessions included in a cluster, and N = All possible combinations.</p></sec><sec id="s3"><title>3. Results</title><p>Analysis of variance (ANOVA) for the eight quantitative traits indicated that differences among the accessions were highly significant (p = 0.001) for number</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Field location and origin of Coffea arabica accessions evaluated in this study</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >N˚</th><th align="center" valign="middle" >Plot no.</th><th align="center" valign="middle" >Accession name</th><th align="center" valign="middle" >Abbreviated name</th><th align="center" valign="middle" >Origin</th></tr></thead><tr><td align="center" valign="middle" >1</td><td align="center" valign="middle" >2</td><td align="center" valign="middle" >Jackson 2/1257</td><td align="center" valign="middle" >J2/1257</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >Mibirizi 68-1589</td><td align="center" valign="middle" >Mi 68-1589</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >3</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >Mibirizi 49-1848BV</td><td align="center" valign="middle" >Mi 49-1848BV</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >Mibirizi 49-00</td><td align="center" valign="middle" >Mi 49-00</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >5</td><td align="center" valign="middle" >12</td><td align="center" valign="middle" >Bourbon Mayaguez 71-2147</td><td align="center" valign="middle" >BM 71-2147</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >6</td><td align="center" valign="middle" >13</td><td align="center" valign="middle" >Bourbon Mayaguez 139</td><td align="center" valign="middle" >BM 139</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >7</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >Mysore 175</td><td align="center" valign="middle" >MY 175</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >8</td><td align="center" valign="middle" >16</td><td align="center" valign="middle" >Mysore de Mulungu</td><td align="center" valign="middle" >MY 1105</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >9</td><td align="center" valign="middle" >18</td><td align="center" valign="middle" >Harrar</td><td align="center" valign="middle" >Ha</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >10</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >Amphillo</td><td align="center" valign="middle" >Amp</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >11</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >Ainamba Kaffa</td><td align="center" valign="middle" >A.K</td><td align="center" valign="middle" >ETHIOPIA</td></tr><tr><td align="center" valign="middle" >12</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >Teffari Kella Sidamo</td><td align="center" valign="middle" >TKS</td><td align="center" valign="middle" >ETHIOPIA</td></tr><tr><td align="center" valign="middle" >13</td><td align="center" valign="middle" >31</td><td align="center" valign="middle" >Gimma Kaffa</td><td align="center" valign="middle" >G K</td><td align="center" valign="middle" >ETHIOPIA</td></tr><tr><td align="center" valign="middle" >14</td><td align="center" valign="middle" >35</td><td align="center" valign="middle" >Population 3303N˚21</td><td align="center" valign="middle" >Pop 3303/21</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >15</td><td align="center" valign="middle" >36</td><td align="center" valign="middle" >Population 3303N˚22</td><td align="center" valign="middle" >Pop 3303/22</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >16</td><td align="center" valign="middle" >42</td><td align="center" valign="middle" >Mizan Taffari Kaffa</td><td align="center" valign="middle" >MT K</td><td align="center" valign="middle" >ETHIOPIA</td></tr><tr><td align="center" valign="middle" >17</td><td align="center" valign="middle" >62</td><td align="center" valign="middle" >Blue Mountain Jamaica 13-1066</td><td align="center" valign="middle" >BMJ 13-1066</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >18</td><td align="center" valign="middle" >67</td><td align="center" valign="middle" >Kent 170</td><td align="center" valign="middle" >K 170</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >19</td><td align="center" valign="middle" >69</td><td align="center" valign="middle" >K7 (Rwanda)</td><td align="center" valign="middle" >K7<sup>&#174;</sup></td><td align="center" valign="middle" >KENYA</td></tr><tr><td align="center" valign="middle" >20</td><td align="center" valign="middle" >156</td><td align="center" valign="middle" >AR 18</td><td align="center" valign="middle" >AR 18</td><td align="center" valign="middle" >KENYA (Isabu)</td></tr><tr><td align="center" valign="middle" >21</td><td align="center" valign="middle" >158</td><td align="center" valign="middle" >AR 575</td><td align="center" valign="middle" >AR 575</td><td align="center" valign="middle" >KENYA (Isabu)</td></tr></tbody></table></table-wrap><p>of primary branches, number of leaves per branch, number of cherries per internode, coffee leaf rust disease, and significant (p = 0.034) for yield. The ANOVA did not show any significant variation in accessions for internode length, weight of 100 cherries, and number of internodes per branch (<xref ref-type="table" rid="table2">Table 2</xref>).</p><p>As shown in (<xref ref-type="table" rid="table3">Table 3</xref>), the number of primary branches ranged from 63 to 96, averaging 80. Over half of the accessions had between 70 and 80 branches and 28.6% had 81 - 90 branches. The number of leaves per branch averaged 57 and ranged from 15 to 73. Most of the accessions (66.7%) had 51 to 70 leaves per branch. The number of cherries per internode averaged 6.5, ranging from 3 to 11 per internode. Most of the accessions (67.2%) produced 6 to 11 cherries per internode and the remainder had 3 to 5 cherries per internode. Four out of the 21 accessions showed no signs of coffee leaf rust disease, 13 had moderate levels of infection, and 6 had high levels. Cherry yield was below 1.0 t/ha in all accessions; half of the accessions produced between 200 and 500 kg/ha while a proportion of 14.3% of the evaluated accessions.</p><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Mean squares and their significance levels from the analyses of variance for eight quantitative characters measured in 21 coffee accessions</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Source of variation</th><th align="center" valign="middle" >df</th><th align="center" valign="middle" >Primary branches (no.)</th><th align="center" valign="middle" >Leaves per branch (no.)</th><th align="center" valign="middle" >Internodes per branch (no.)</th><th align="center" valign="middle" >Internode length (cm)</th><th align="center" valign="middle" >Cherries per internode (no.)</th><th align="center" valign="middle" >Coffee leaf rust (%)</th><th align="center" valign="middle" >100 cherries weight (g)</th><th align="center" valign="middle" >Cherry yield (kg/ha)</th></tr></thead><tr><td align="center" valign="middle" >Accessions</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >405**</td><td align="center" valign="middle" >1171**</td><td align="center" valign="middle" >21.4</td><td align="center" valign="middle" >0.26</td><td align="center" valign="middle" >6.1**</td><td align="center" valign="middle" >646.7**</td><td align="center" valign="middle" >217</td><td align="center" valign="middle" >55044*</td></tr><tr><td align="center" valign="middle" >Error</td><td align="center" valign="middle" >42</td><td align="center" valign="middle" >106</td><td align="center" valign="middle" >293</td><td align="center" valign="middle" >11.8</td><td align="center" valign="middle" >0.19</td><td align="center" valign="middle" >2.1</td><td align="center" valign="middle" >246</td><td align="center" valign="middle" >490</td><td align="center" valign="middle" >28309</td></tr><tr><td align="center" valign="middle" >Total</td><td align="center" valign="middle" >62</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr></tbody></table></table-wrap><p>*, ** = Significant at the 5% and 1% levels of probability, respectively.</p><table-wrap id="table3" ><label><xref ref-type="table" rid="table3">Table 3</xref></label><caption><title> Mean values of eight quantitative characters measured in the 21 coffee accessions evaluated at Rubona in 2013</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Number &amp; accessions names</th><th align="center" valign="middle" >Primary branches (no.)</th><th align="center" valign="middle" >Leaves per branch (no.)</th><th align="center" valign="middle" >Internodes per branch (no.)</th><th align="center" valign="middle" >Internode length (cm)</th><th align="center" valign="middle" >Cherries per internode (no.)</th><th align="center" valign="middle" >Coffee leaf rust (%)</th><th align="center" valign="middle" >100 cherry weight (g)</th><th align="center" valign="middle" >Cherry yield (kg/ha)</th></tr></thead><tr><td align="center" valign="middle" >1) Jackson 2/1257</td><td align="center" valign="middle" >74</td><td align="center" valign="middle" >51</td><td align="center" valign="middle" >26</td><td align="center" valign="middle" >5.1</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >25.0</td><td align="center" valign="middle" >212.2</td><td align="center" valign="middle" >247</td></tr><tr><td align="center" valign="middle" >2) Mibirizi 68-1589</td><td align="center" valign="middle" >73</td><td align="center" valign="middle" >56</td><td align="center" valign="middle" >23</td><td align="center" valign="middle" >5.8</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >6.3</td><td align="center" valign="middle" >159.6</td><td align="center" valign="middle" >591</td></tr><tr><td align="center" valign="middle" >3) Mibirizi 49-1848BV</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >52</td><td align="center" valign="middle" >23</td><td align="center" valign="middle" >5.7</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >18.8</td><td align="center" valign="middle" >146</td><td align="center" valign="middle" >491</td></tr><tr><td align="center" valign="middle" >4) Mibirizi 49-00</td><td align="center" valign="middle" >74</td><td align="center" valign="middle" >46</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >5.1</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >6.2</td><td align="center" valign="middle" >151</td><td align="center" valign="middle" >575</td></tr><tr><td align="center" valign="middle" >5) Bourbon Mayaguez 71-2147</td><td align="center" valign="middle" >71</td><td align="center" valign="middle" >61</td><td align="center" valign="middle" >23</td><td align="center" valign="middle" >5.0</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >6.25</td><td align="center" valign="middle" >165</td><td align="center" valign="middle" >556</td></tr><tr><td align="center" valign="middle" >6) Bourbon Mayaguez 139</td><td align="center" valign="middle" >90</td><td align="center" valign="middle" >68</td><td align="center" valign="middle" >26</td><td align="center" valign="middle" >5.4</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >6.25</td><td align="center" valign="middle" >167</td><td align="center" valign="middle" >500</td></tr><tr><td align="center" valign="middle" >7) Mysore 175</td><td align="center" valign="middle" >91</td><td align="center" valign="middle" >59</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >5.0</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >6.25</td><td align="center" valign="middle" >203</td><td align="center" valign="middle" >603</td></tr><tr><td align="center" valign="middle" >8) Mysore de Mulungu</td><td align="center" valign="middle" >86</td><td align="center" valign="middle" >73</td><td align="center" valign="middle" >29</td><td align="center" valign="middle" >5.7</td><td align="center" valign="middle" >11</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >168</td><td align="center" valign="middle" >817</td></tr><tr><td align="center" valign="middle" >9) Harrar</td><td align="center" valign="middle" >79</td><td align="center" valign="middle" >54</td><td align="center" valign="middle" >25</td><td align="center" valign="middle" >4.8</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >161</td><td align="center" valign="middle" >664</td></tr><tr><td align="center" valign="middle" >10) Amphillo</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >66</td><td align="center" valign="middle" >25</td><td align="center" valign="middle" >5.1</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >6.2</td><td align="center" valign="middle" >185</td><td align="center" valign="middle" >309</td></tr><tr><td align="center" valign="middle" >11) AinambaKaffa</td><td align="center" valign="middle" >88</td><td align="center" valign="middle" >66</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >6.0</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >6.25</td><td align="center" valign="middle" >204</td><td align="center" valign="middle" >369</td></tr><tr><td align="center" valign="middle" >12) TeffariKella Sidamo</td><td align="center" valign="middle" >79</td><td align="center" valign="middle" >65</td><td align="center" valign="middle" >21</td><td align="center" valign="middle" >5.4</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >12.5</td><td align="center" valign="middle" >153</td><td align="center" valign="middle" >251</td></tr><tr><td align="center" valign="middle" >13) Gimma Kaffa</td><td align="center" valign="middle" >73</td><td align="center" valign="middle" >39</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >5.3</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >6.2</td><td align="center" valign="middle" >184</td><td align="center" valign="middle" >275</td></tr><tr><td align="center" valign="middle" >14) Population 3303N˚21</td><td align="center" valign="middle" >86</td><td align="center" valign="middle" >73</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >5.9</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >176</td><td align="center" valign="middle" >640</td></tr><tr><td align="center" valign="middle" >15) Population 3303N˚22</td><td align="center" valign="middle" >77</td><td align="center" valign="middle" >64</td><td align="center" valign="middle" >21</td><td align="center" valign="middle" >5.6</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >164</td><td align="center" valign="middle" >647</td></tr><tr><td align="center" valign="middle" >16) Mizan Taffari Kaffa</td><td align="center" valign="middle" >90</td><td align="center" valign="middle" >55</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >5.3</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >37.5</td><td align="center" valign="middle" >180</td><td align="center" valign="middle" >224</td></tr><tr><td align="center" valign="middle" >17) BlueMountain Jamaica 13-1066</td><td align="center" valign="middle" >63</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >19</td><td align="center" valign="middle" >5.3</td><td align="center" valign="middle" >3</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >151</td><td align="center" valign="middle" >73</td></tr><tr><td align="center" valign="middle" >18) Kent 170</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >69</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >5.2</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >56.3</td><td align="center" valign="middle" >180</td><td align="center" valign="middle" >240</td></tr><tr><td align="center" valign="middle" >19) K7</td><td align="center" valign="middle" >96</td><td align="center" valign="middle" >50</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >5.2</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >6.3</td><td align="center" valign="middle" >202</td><td align="center" valign="middle" >491</td></tr><tr><td align="center" valign="middle" >20) AR 18</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >5.2</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >31.2</td><td align="center" valign="middle" >167</td><td align="center" valign="middle" >219</td></tr><tr><td align="center" valign="middle" >21)AR 575</td><td align="center" valign="middle" >77</td><td align="center" valign="middle" >50</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >5.7</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >18.7</td><td align="center" valign="middle" >142</td><td align="center" valign="middle" >496</td></tr><tr><td align="center" valign="middle" >Mean</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >57</td><td align="center" valign="middle" >23</td><td align="center" valign="middle" >5.4</td><td align="center" valign="middle" >6.5</td><td align="center" valign="middle" >15.8</td><td align="center" valign="middle" >172</td><td align="center" valign="middle" >442</td></tr><tr><td align="center" valign="middle" >LSD (0.05)</td><td align="center" valign="middle" >17</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >ns</td><td align="center" valign="middle" >Ns</td><td align="center" valign="middle" >22.1</td><td align="center" valign="middle" >27.6</td><td align="center" valign="middle" >ns</td><td align="center" valign="middle" >278</td></tr><tr><td align="center" valign="middle" >CV (%)</td><td align="center" valign="middle" >13</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >14.3</td><td align="center" valign="middle" >8.2</td><td align="center" valign="middle" >2.3</td><td align="center" valign="middle" >93.0</td><td align="center" valign="middle" >13.0</td><td align="center" valign="middle" >38.0</td></tr></tbody></table></table-wrap><p>A significant (p &lt; 0.05) positive correlation was observed between number of cherries per internode and internode length (<xref ref-type="table" rid="table4">Table 4</xref>). Number of leaves per branch was positively correlated with number of cherries per internode and number of primary branches. A highly significant (p &lt; 0.01) positive correlation was observed between number of cherries per internode and yield (<xref ref-type="table" rid="table4">Table 4</xref>). Coffee leaf rust exhibited a highly significant negative correlation with yield and number of cherries per internode and a significant negative correlation with number of leaves per branches (<xref ref-type="table" rid="table4">Table 4</xref>).</p><p>The existence of phenotypic variation among the accessions was further explained by different clusters across the PCA biplot (<xref ref-type="fig" rid="fig1">Figure 1</xref>). The PCA grouped the accessions into three clades based on their similarities and differences in terms of the quantitative traits. The first principal component (PC 1) alone contributed 43% of the total variation, mainly due to yield per tree, coffee leaf rust, number of cherries per internode and number of leaves per branch (<xref ref-type="table" rid="table5">Table 5</xref>). Characters which contributed to the second principal component (PC 2) accounted for 21% of the total variation and were dominated by traits such as number of primary branches and weight of 100 cherries. The quantitative characters which showed relatively higher absolute values in the first component were yield per tree, coffee leaf rust, number of cherries per internode and number of leaves per branch (<xref ref-type="table" rid="table5">Table 5</xref>). Thus, these characters were the main source of the variation in all accessions. The accessions which remained dispersed had larger genetic variability for the traits studied, while accessions and clades which are less scattered in the principal component axes had substantial similarities in the traits evaluated.</p><p>The highest inter-cluster distance was 475 and was observed between cluster I and II, followed by I and III clusters (293) and the lowest was observed between II and III clusters (182) (<xref ref-type="table" rid="table9">Table 9</xref>).</p><table-wrap id="table4" ><label><xref ref-type="table" rid="table4">Table 4</xref></label><caption><title> Correlations of 8 quantitative traits in 21 coffee accessions evaluated at Rubona in 2013</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Characters</th><th align="center" valign="middle" >Primary branches</th><th align="center" valign="middle" >Leaves per branch</th><th align="center" valign="middle" >Internodes per branch</th><th align="center" valign="middle" >Internode length</th><th align="center" valign="middle" >Cherries per internode</th><th align="center" valign="middle" >Coffee leaf rust</th><th align="center" valign="middle" >100 cherries weight</th><th align="center" valign="middle" >Cherry yield</th></tr></thead><tr><td align="center" valign="middle" >Primary branches</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >0.543*</td><td align="center" valign="middle" >0.09</td><td align="center" valign="middle" >0.352</td><td align="center" valign="middle" >0.226</td><td align="center" valign="middle" >−0.352</td><td align="center" valign="middle" >0.539*</td><td align="center" valign="middle" >0.258</td></tr><tr><td align="center" valign="middle" >Leaves per branch</td><td align="center" valign="middle" >0.543*</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >0.451*</td><td align="center" valign="middle" >0.264</td><td align="center" valign="middle" >0.37</td><td align="center" valign="middle" >−0.473*</td><td align="center" valign="middle" >0.186</td><td align="center" valign="middle" >0.384</td></tr><tr><td align="center" valign="middle" >Internode per branch</td><td align="center" valign="middle" >0.09</td><td align="center" valign="middle" >0.451*</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >−0.192</td><td align="center" valign="middle" >0.453*</td><td align="center" valign="middle" >−0.156</td><td align="center" valign="middle" >−0.14</td><td align="center" valign="middle" >0.204</td></tr><tr><td align="center" valign="middle" >Internode</td><td align="center" valign="middle" >0.352</td><td align="center" valign="middle" >0.264</td><td align="center" valign="middle" >−0.192</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >0.138</td><td align="center" valign="middle" >−0.287</td><td align="center" valign="middle" >0.213</td><td align="center" valign="middle" >0.336</td></tr><tr><td align="center" valign="middle" >Length</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >Cherries per internode</td><td align="center" valign="middle" >0.226</td><td align="center" valign="middle" >0.37</td><td align="center" valign="middle" >0.453*</td><td align="center" valign="middle" >0.138</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >−0.75**</td><td align="center" valign="middle" >−0.08</td><td align="center" valign="middle" >0.9**</td></tr><tr><td align="center" valign="middle" >Coffee leaf rust</td><td align="center" valign="middle" >−0.352</td><td align="center" valign="middle" >−0.473*</td><td align="center" valign="middle" >−0.156</td><td align="center" valign="middle" >−0.287</td><td align="center" valign="middle" >−0.75**</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >−0.113</td><td align="center" valign="middle" >−0.75*</td></tr><tr><td align="center" valign="middle" >100 cherries weight</td><td align="center" valign="middle" >0.539*</td><td align="center" valign="middle" >0.186</td><td align="center" valign="middle" >−0.14</td><td align="center" valign="middle" >0.213</td><td align="center" valign="middle" >−0.08</td><td align="center" valign="middle" >−0.113</td><td align="center" valign="middle" >1.0</td><td align="center" valign="middle" >−0.153</td></tr><tr><td align="center" valign="middle" >Yield</td><td align="center" valign="middle" >0.258</td><td align="center" valign="middle" >0.384</td><td align="center" valign="middle" >0.204</td><td align="center" valign="middle" >0.336</td><td align="center" valign="middle" >0.9**</td><td align="center" valign="middle" >−0.75*</td><td align="center" valign="middle" >−0.153</td><td align="center" valign="middle" >1.0</td></tr></tbody></table></table-wrap><p>*, ** = Significant at 5% and 1% levels of probability, respectively.</p><table-wrap id="table5" ><label><xref ref-type="table" rid="table5">Table 5</xref></label><caption><title> First three principal components of the 8 quantitative characters in the 21 coffee accessions</title></caption><table><tbody><thead><tr><th align="center" valign="middle" ></th><th align="center" valign="middle"  colspan="3"  >Eigenvectors</th></tr></thead><tr><td align="center" valign="middle" >Characters</td><td align="center" valign="middle" >PC 1</td><td align="center" valign="middle" >PC 2</td><td align="center" valign="middle" >PC 3</td></tr><tr><td align="center" valign="middle" >Number of primary branches</td><td align="center" valign="middle" >0.585</td><td align="center" valign="middle" >0.615</td><td align="center" valign="middle" >0.253</td></tr><tr><td align="center" valign="middle" >Number of leaves per branch</td><td align="center" valign="middle" >0.707</td><td align="center" valign="middle" >0.253</td><td align="center" valign="middle" >0.298</td></tr><tr><td align="center" valign="middle" >Number of internode per branch</td><td align="center" valign="middle" >0.216</td><td align="center" valign="middle" >−0.31</td><td align="center" valign="middle" >0.85</td></tr><tr><td align="center" valign="middle" >Internode length (cm)</td><td align="center" valign="middle" >0.59</td><td align="center" valign="middle" >0.316</td><td align="center" valign="middle" >−0.44</td></tr><tr><td align="center" valign="middle" >Number of cherries per internode</td><td align="center" valign="middle" >0.85</td><td align="center" valign="middle" >−0.363</td><td align="center" valign="middle" >−0.21</td></tr><tr><td align="center" valign="middle" >Coffee leaf rust (%)</td><td align="center" valign="middle" >−0.84</td><td align="center" valign="middle" >0.169</td><td align="center" valign="middle" >0.014</td></tr><tr><td align="center" valign="middle" >Weight of 100 cherries (g)</td><td align="center" valign="middle" >0.18</td><td align="center" valign="middle" >0.834</td><td align="center" valign="middle" >0.065</td></tr><tr><td align="center" valign="middle" >Yield (kg/ha)</td><td align="center" valign="middle" >0.844</td><td align="center" valign="middle" >−0.42</td><td align="center" valign="middle" >−0.108</td></tr></tbody></table></table-wrap><p>Accessions in the first cluster contributed to the lowest mean value of number of trees attacked by coffee leaf rust, moderate mean yield per tree and highest mean number of leaves per branch, number of primary branches, number of internodes per branch, internode length and number of cherries per internode. The second grouped accessions with the highest mean yield per tree, and moderate mean values of all the other characters. The third cluster grouped accessions the lowest mean value of traits like number of leaves per branch, number of cherries per internode, and yield per tree. Furthermore, this cluster had the highest number of trees attacked by leaf rust. Lastly, the singleton BM Jamaica 13-1066 separated alone within the 21 accessions and was characterized by the lowest number of leaves per branch, number of cherries per internode, and yield per tree; and the highest number of trees attacked by leaf rust.</p><p>The pair-wise genetic distances based on the phenotypic traits showed varying genetic distances for the 21 coffee accessions (<xref ref-type="table" rid="table7">Table 7</xref>). Genetic distances ranging from 0.09 to 5.63 were observed in the pair-wise combinations. The minimum genetic distance of 0.09 was recorded between the 3<sup>rd</sup> (MB 68-1589) and the 21<sup>st</sup> (AR 575) accessions while the highest genetic distance of 5.63 was recorded between the 17<sup>th</sup> (BM Jamaica 13-1066) and the 8<sup>th </sup>(M de Mulungu) accessions (<xref ref-type="table" rid="table7">Table 7</xref>).</p></sec><sec id="s4"><title>4. Discussion</title><p>The efficient exploitation of germplasm lies in comprehending its genetic difference and elaborating proper relating phenotypical classes [<xref ref-type="bibr" rid="scirp.79120-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref18">18</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref19">19</xref>] . This study sought to determine the genetic diversity in coffee accessions in Rwanda using morphological characterization as a basis for germplasm development and management in Rwanda. The existence of genetic variation in coffee accessions in Rwanda was confirmed, which implies that despites their downsides, morphological markers are still useful for characterizing coffee germplasm as previously stated by [<xref ref-type="bibr" rid="scirp.79120-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref7">7</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref10">10</xref>] and [<xref ref-type="bibr" rid="scirp.79120-ref12">12</xref>] .</p><table-wrap id="table6" ><label><xref ref-type="table" rid="table6">Table 6</xref></label><caption><title> Distribution of accessions in four clusters with location</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Cluster</th><th align="center" valign="middle" >Members</th><th align="center" valign="middle" >Accessions names and respective number</th><th align="center" valign="middle" >Location</th></tr></thead><tr><td align="center" valign="middle"  rowspan="3"  >I</td><td align="center" valign="middle"  rowspan="3"  >7</td><td align="center" valign="middle" >Mibirizi 68-1589 (2); Mibirizi 49-1848BV (3); Mibirizi 49-00 (4); Bourbon Mayaguez 71-2147 (5); Harrar (9)</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >TeffariKella Sidamo (12)</td><td align="center" valign="middle" >Kenya</td></tr><tr><td align="center" valign="middle" >AR 575 (21)</td><td align="center" valign="middle" >Ethiopia</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >II</td><td align="center" valign="middle"  rowspan="3"  >8</td><td align="center" valign="middle" >Population 3303N˚21 (14); Bourbon Mayaguez 139 (6); Amphillo (10); Mysore de Mulungu (8)</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >K7 (Rwanda) (19)</td><td align="center" valign="middle" >Ethiopia</td></tr><tr><td align="center" valign="middle" >Ainamba Kaffa (11)</td><td align="center" valign="middle" >Kenya</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >III</td><td align="center" valign="middle"  rowspan="3"  >5</td><td align="center" valign="middle" >Jackson 2/1257 (1)</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr><tr><td align="center" valign="middle" >Mizan Taffari Kaffa (16); Gimma Kaffa (13)</td><td align="center" valign="middle" >Ethiopia</td></tr><tr><td align="center" valign="middle" >AR 18 (20) Kent 170 (18)</td><td align="center" valign="middle" >Kenya</td></tr><tr><td align="center" valign="middle" >IV (singleton)</td><td align="center" valign="middle" >1</td><td align="center" valign="middle" >Blue Mountain Jamaica 13-1066 (17)</td><td align="center" valign="middle" >DRC (Mulungu)</td></tr></tbody></table></table-wrap><p>(): Accession number.</p><table-wrap id="table7" ><label><xref ref-type="table" rid="table7">Table 7</xref></label><caption><title> Average intra (bold) and inter cluster distances for the 21 coffee accessions</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Cluster</th><th align="center" valign="middle" >I</th><th align="center" valign="middle" >II</th><th align="center" valign="middle" >III</th></tr></thead><tr><td align="center" valign="middle" >I</td><td align="center" valign="middle" >37.2</td><td align="center" valign="middle" >475</td><td align="center" valign="middle" >293</td></tr><tr><td align="center" valign="middle" >II</td><td align="center" valign="middle" ></td><td align="center" valign="middle" >62</td><td align="center" valign="middle" >182</td></tr><tr><td align="center" valign="middle" >III</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" >51.3</td></tr></tbody></table></table-wrap><p>The data (<xref ref-type="table" rid="table3">Table 3</xref>) showed existence of significant morphological variation and, hence, remarkable genetic diversity among the 21 accessions. Adding to this, the study also revealed considerable correlation among the evaluated agronomic traits. Taken together, this information is very instrumental for coffee improvement, particularly during parental selection process. As an example, high yielding and leaf rust resistance accessions were identified, these lines are potential parental donors for further breeding efforts. The significant variation found for the phenotypic traits (number of primary branches, number of leaves, number of cherries per internode, yield and coffee leaf rust) indicated that genetic diversity exists in the Rwandan coffee germplasm. Hence, improvement of accessions through selection and crossing can be practically considered. The morphological variation in Coffea arabica observed in this study agreed with [<xref ref-type="bibr" rid="scirp.79120-ref20">20</xref>] who reported significant differences in coffee accessions for quantitative characters in Ethiopia. This variation among C. arabica cultivars may be attributed to a certain degree of out crossing that might have occurred among cultivars as also reported by [<xref ref-type="bibr" rid="scirp.79120-ref21">21</xref>] . However, this was not the case in the Rwandan accessions as they were established from the original collections, but it may due to different impacts of environment on the cultivars in the expression of traits. Similar view was reported by [<xref ref-type="bibr" rid="scirp.79120-ref22">22</xref>] .</p><p>Correlations observed among characters (<xref ref-type="table" rid="table4">Table 4</xref>) could be used to identify important traits that are desired by coffee breeders [<xref ref-type="bibr" rid="scirp.79120-ref21">21</xref>] . High positive correlation coefficient (r = 0.9) observed between number of cherries and yield indicated that both characters share some common genetic information, while traits with negative correlations need careful selection considerations.</p><p>The PCA (<xref ref-type="fig" rid="fig1">Figure 1</xref>) indicated that yield per tree, coffee leaf rust, number of cherries per internode and number of leaves per branch was the main source of variations in the 21 coffee germplasm. The first three PCA accounted for 78.3% of the total variation. Moreover, the PCA grouped accessions according to their similarities; closer accessions have a narrow genetic divergence while more scattered accessions have a broader genetic dissimilarity [<xref ref-type="bibr" rid="scirp.79120-ref23">23</xref>] . Similarly, the varying pair-wise genetic distances based on the phenotypic traits also indicated that genetic diversity exists among the 21 coffee accession germplasm and this may accelerate heterotic effect in crosses and a widen the spectrum of variability in segregating generations, as it has been previously asserted by other previous studies [<xref ref-type="bibr" rid="scirp.79120-ref24">24</xref>] .</p><p>Inter and intra cluster distances are key determinants of genetic divergence, a critical aspect for selecting parents to integrate into hybridization programs [<xref ref-type="bibr" rid="scirp.79120-ref25">25</xref>] . In this study, the observed high inter-cluster (<xref ref-type="table" rid="table7">Table 7</xref>) distances between cluster I and II showed that crossing of parents across clusters would also facilitate</p><table-wrap id="table8" ><label><xref ref-type="table" rid="table8">Table 8</xref></label><caption><title> Estimates of genetic distance based on phenotypic characters for all pair-wise comparisons of 21 coffee accessions</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >ID</th><th align="center" valign="middle" >1</th><th align="center" valign="middle" >2</th><th align="center" valign="middle" >3</th><th align="center" valign="middle" >4</th><th align="center" valign="middle" >5</th><th align="center" valign="middle" >6</th><th align="center" valign="middle" >7</th><th align="center" valign="middle" >8</th><th align="center" valign="middle" >9</th><th align="center" valign="middle" >10</th><th align="center" valign="middle" >11</th><th align="center" valign="middle" >12</th><th align="center" valign="middle" >13</th><th align="center" valign="middle" >14</th><th align="center" valign="middle" >15</th><th align="center" valign="middle" >16</th><th align="center" valign="middle" >17</th><th align="center" valign="middle" >18</th><th align="center" valign="middle" >19</th><th align="center" valign="middle" >20</th><th align="center" valign="middle" >21</th></tr></thead><tr><td align="center" valign="middle" >1</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" >1.45</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >3</td><td align="center" valign="middle" >1.4</td><td align="center" valign="middle" >0.16</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >1.12</td><td align="center" valign="middle" >0.38</td><td align="center" valign="middle" >0.32</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >5</td><td align="center" valign="middle" >0.89</td><td align="center" valign="middle" >0.45</td><td align="center" valign="middle" >0.46</td><td align="center" valign="middle" >0.13</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >6</td><td align="center" valign="middle" >1.02</td><td align="center" valign="middle" >0.59</td><td align="center" valign="middle" >0.76</td><td align="center" valign="middle" >0.53</td><td align="center" valign="middle" >0.53</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >7</td><td align="center" valign="middle" >0.9</td><td align="center" valign="middle" >1.04</td><td align="center" valign="middle" >1.47</td><td align="center" valign="middle" >0.91</td><td align="center" valign="middle" >0.67</td><td align="center" valign="middle" >0.55</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >8</td><td align="center" valign="middle" >2.21</td><td align="center" valign="middle" >0.77</td><td align="center" valign="middle" >1.33</td><td align="center" valign="middle" >1.2</td><td align="center" valign="middle" >1.26</td><td align="center" valign="middle" >0.61</td><td align="center" valign="middle" >1.31</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >9</td><td align="center" valign="middle" >1.32</td><td align="center" valign="middle" >0.72</td><td align="center" valign="middle" >0.92</td><td align="center" valign="middle" >0.23</td><td align="center" valign="middle" >0.23</td><td align="center" valign="middle" >0.55</td><td align="center" valign="middle" >0.66</td><td align="center" valign="middle" >0.94</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >10</td><td align="center" valign="middle" >0.34</td><td align="center" valign="middle" >0.79</td><td align="center" valign="middle" >0.83</td><td align="center" valign="middle" >0.53</td><td align="center" valign="middle" >0.33</td><td align="center" valign="middle" >0.3</td><td align="center" valign="middle" >0.51</td><td align="center" valign="middle" >1.32</td><td align="center" valign="middle" >0.61</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >11</td><td align="center" valign="middle" >1.05</td><td align="center" valign="middle" >0.95</td><td align="center" valign="middle" >1.23</td><td align="center" valign="middle" >1.56</td><td align="center" valign="middle" >1.36</td><td align="center" valign="middle" >0.77</td><td align="center" valign="middle" >0.82</td><td align="center" valign="middle" >1.63</td><td align="center" valign="middle" >1.92</td><td align="center" valign="middle" >0.77</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >12</td><td align="center" valign="middle" >1.14</td><td align="center" valign="middle" >0.52</td><td align="center" valign="middle" >0.36</td><td align="center" valign="middle" >0.49</td><td align="center" valign="middle" >0.43</td><td align="center" valign="middle" >0.56</td><td align="center" valign="middle" >1.06</td><td align="center" valign="middle" >1.78</td><td align="center" valign="middle" >0.96</td><td align="center" valign="middle" >0.44</td><td align="center" valign="middle" >0.91</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >13</td><td align="center" valign="middle" >0.45</td><td align="center" valign="middle" >0.71</td><td align="center" valign="middle" >0.63</td><td align="center" valign="middle" >0.47</td><td align="center" valign="middle" >0.43</td><td align="center" valign="middle" >0.88</td><td align="center" valign="middle" >0.79</td><td align="center" valign="middle" >2.09</td><td align="center" valign="middle" >0.87</td><td align="center" valign="middle" >0.37</td><td align="center" valign="middle" >0.95</td><td align="center" valign="middle" >0.47</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >14</td><td align="center" valign="middle" >1.6</td><td align="center" valign="middle" >0.4</td><td align="center" valign="middle" >0.71</td><td align="center" valign="middle" >0.98</td><td align="center" valign="middle" >0.88</td><td align="center" valign="middle" >0.46</td><td align="center" valign="middle" >0.81</td><td align="center" valign="middle" >0.87</td><td align="center" valign="middle" >1.26</td><td align="center" valign="middle" >0.83</td><td align="center" valign="middle" >0.35</td><td align="center" valign="middle" >0.68</td><td align="center" valign="middle" >1.11</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >15</td><td align="center" valign="middle" >1.41</td><td align="center" valign="middle" >0.17</td><td align="center" valign="middle" >0.31</td><td align="center" valign="middle" >0.4</td><td align="center" valign="middle" >0.34</td><td align="center" valign="middle" >0.49</td><td align="center" valign="middle" >0.74</td><td align="center" valign="middle" >1.04</td><td align="center" valign="middle" >0.71</td><td align="center" valign="middle" >0.64</td><td align="center" valign="middle" >0.74</td><td align="center" valign="middle" >0.37</td><td align="center" valign="middle" >0.66</td><td align="center" valign="middle" >0.21</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >16</td><td align="center" valign="middle" >0.56</td><td align="center" valign="middle" >1.29</td><td align="center" valign="middle" >1.07</td><td align="center" valign="middle" >0.99</td><td align="center" valign="middle" >0.97</td><td align="center" valign="middle" >0.58</td><td align="center" valign="middle" >0.89</td><td align="center" valign="middle" >2.12</td><td align="center" valign="middle" >1.39</td><td align="center" valign="middle" >0.42</td><td align="center" valign="middle" >0.79</td><td align="center" valign="middle" >0.57</td><td align="center" valign="middle" >0.64</td><td align="center" valign="middle" >1.12</td><td align="center" valign="middle" >1.08</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >17</td><td align="center" valign="middle" >2.3</td><td align="center" valign="middle" >2.81</td><td align="center" valign="middle" >1.87</td><td align="center" valign="middle" >2.2</td><td align="center" valign="middle" >2.44</td><td align="center" valign="middle" >3.48</td><td align="center" valign="middle" >3.67</td><td align="center" valign="middle" >5.63**</td><td align="center" valign="middle" >3.4</td><td align="center" valign="middle" >2.7</td><td align="center" valign="middle" >3.55</td><td align="center" valign="middle" >1.91</td><td align="center" valign="middle" >1.61</td><td align="center" valign="middle" >3.83</td><td align="center" valign="middle" >2.89</td><td align="center" valign="middle" >1.86</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >18</td><td align="center" valign="middle" >0.55</td><td align="center" valign="middle" >1.29</td><td align="center" valign="middle" >1.02</td><td align="center" valign="middle" >1.08</td><td align="center" valign="middle" >0.86</td><td align="center" valign="middle" >0.82</td><td align="center" valign="middle" >1.13</td><td align="center" valign="middle" >2.17</td><td align="center" valign="middle" >1.42</td><td align="center" valign="middle" >0.49</td><td align="center" valign="middle" >1.14</td><td align="center" valign="middle" >0.63</td><td align="center" valign="middle" >0.82</td><td align="center" valign="middle" >1.35</td><td align="center" valign="middle" >1.18</td><td align="center" valign="middle" >0.24</td><td align="center" valign="middle" >1.72</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >19</td><td align="center" valign="middle" >0.75</td><td align="center" valign="middle" >1.17</td><td align="center" valign="middle" >1.5</td><td align="center" valign="middle" >0.99</td><td align="center" valign="middle" >0.92</td><td align="center" valign="middle" >0.43</td><td align="center" valign="middle" >0.15</td><td align="center" valign="middle" >1.34</td><td align="center" valign="middle" >0.87</td><td align="center" valign="middle" >0.47</td><td align="center" valign="middle" >0.66</td><td align="center" valign="middle" >1.09</td><td align="center" valign="middle" >0.76</td><td align="center" valign="middle" >0.85</td><td align="center" valign="middle" >0.94</td><td align="center" valign="middle" >0.59</td><td align="center" valign="middle" >3.54</td><td align="center" valign="middle" >1.07</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >20</td><td align="center" valign="middle" >0.63</td><td align="center" valign="middle" >1.08</td><td align="center" valign="middle" >0.77</td><td align="center" valign="middle" >0.74</td><td align="center" valign="middle" >0.59</td><td align="center" valign="middle" >0.55</td><td align="center" valign="middle" >1.1</td><td align="center" valign="middle" >2.01</td><td align="center" valign="middle" >1.13</td><td align="center" valign="middle" >0.28</td><td align="center" valign="middle" >1.06</td><td align="center" valign="middle" >0.3</td><td align="center" valign="middle" >0.62</td><td align="center" valign="middle" >1.1</td><td align="center" valign="middle" >0.87</td><td align="center" valign="middle" >0.21</td><td align="center" valign="middle" >1.85</td><td align="center" valign="middle" >0.17</td><td align="center" valign="middle" >0.99</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >21</td><td align="center" valign="middle" >1.54</td><td align="center" valign="middle" >0.29</td><td align="center" valign="middle" >0.09*</td><td align="center" valign="middle" >0.36</td><td align="center" valign="middle" >0.56</td><td align="center" valign="middle" >0.66</td><td align="center" valign="middle" >1.36</td><td align="center" valign="middle" >1.49</td><td align="center" valign="middle" >1</td><td align="center" valign="middle" >0.87</td><td align="center" valign="middle" >1.12</td><td align="center" valign="middle" >0.27</td><td align="center" valign="middle" >0.68</td><td align="center" valign="middle" >0.62</td><td align="center" valign="middle" >0.29</td><td align="center" valign="middle" >0.85</td><td align="center" valign="middle" >1.82</td><td align="center" valign="middle" >1</td><td align="center" valign="middle" >1.32</td><td align="center" valign="middle" >0.69</td><td align="center" valign="middle" ></td></tr></tbody></table></table-wrap><p>*, **: Lowest and highest genetic distance, respectively.</p><p>transgressive segregation and heterosis maximization. The low inter and intra cluster distances showed close similarities between and within clusters, respectively. The inter-cluster distances were higher than the average intra-cluster distances which mean that accessions between clusters had a higher genetic diversity than accessions within clusters, as it has been also supported by [<xref ref-type="bibr" rid="scirp.79120-ref26">26</xref>] .</p><p>Genetic diversity oftentimes correlated with the geographic diversity. Yet, the present study indicated that geographical and genetic diversity could not be associated (<xref ref-type="table" rid="table6">Table 6</xref>). In this view, researches have reported that morphological variation count more than variations in geographic origin, as an evaluator of genetic diversity in coffee [<xref ref-type="bibr" rid="scirp.79120-ref20">20</xref>] , due to potential gene flow that might have occurred during the evolutionary history of development and selection procedure that saw some genotypes with new genes that account for the existing heterozygosity among coffee accessions from the same geographic source, a fact that also corroborates</p><table-wrap id="table9" ><label><xref ref-type="table" rid="table9">Table 9</xref></label><caption><title> Cluster means of the 8 quantitative traits for the 21 coffee accessions</title></caption><table><tbody><thead><tr><th align="center" valign="middle" ></th><th align="center" valign="middle"  colspan="3"  >Cluster means</th><th align="center" valign="middle" ></th></tr></thead><tr><td align="center" valign="middle" >Characters</td><td align="center" valign="middle" >I</td><td align="center" valign="middle" >II</td><td align="center" valign="middle" >III</td><td align="center" valign="middle" >IV (singleton)</td></tr><tr><td align="center" valign="middle" >Number of primary branches</td><td align="center" valign="middle" >75.50</td><td align="center" valign="middle" >88.53</td><td align="center" valign="middle" >79.71</td><td align="center" valign="middle" >63.77</td></tr><tr><td align="center" valign="middle" >Number of leaves per branch</td><td align="center" valign="middle" >56</td><td align="center" valign="middle" >65</td><td align="center" valign="middle" >56.8</td><td align="center" valign="middle" >15</td></tr><tr><td align="center" valign="middle" >Number of internode per branch</td><td align="center" valign="middle" >5.39</td><td align="center" valign="middle" >5.47</td><td align="center" valign="middle" >5.23</td><td align="center" valign="middle" >5.26</td></tr><tr><td align="center" valign="middle" >Internode length</td><td align="center" valign="middle" >22.75</td><td align="center" valign="middle" >24.28</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >19</td></tr><tr><td align="center" valign="middle" >Number of cherries per internode</td><td align="center" valign="middle" >7.25</td><td align="center" valign="middle" >7.42</td><td align="center" valign="middle" >4.8</td><td align="center" valign="middle" >3</td></tr><tr><td align="center" valign="middle" >Coffee leaf rust</td><td align="center" valign="middle" >8.6</td><td align="center" valign="middle" >4.4</td><td align="center" valign="middle" >31.2</td><td align="center" valign="middle" >75</td></tr><tr><td align="center" valign="middle" >Weight(g) of 100 cherries</td><td align="center" valign="middle" >155.2</td><td align="center" valign="middle" >186.74</td><td align="center" valign="middle" >184.8</td><td align="center" valign="middle" >151.5</td></tr><tr><td align="center" valign="middle" >Yield (kg)</td><td align="center" valign="middle" >534</td><td align="center" valign="middle" >533</td><td align="center" valign="middle" >241</td><td align="center" valign="middle" >290</td></tr></tbody></table></table-wrap><p>with [<xref ref-type="bibr" rid="scirp.79120-ref27">27</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref28">28</xref>] . Another cause might be the rare random mutation which might have occurred in accessions as previously viewed by [<xref ref-type="bibr" rid="scirp.79120-ref28">28</xref>] [<xref ref-type="bibr" rid="scirp.79120-ref29">29</xref>] .</p><p>Far more, clusters may be selected also based on agronomic potential. For example, accessions in cluster one (<xref ref-type="table" rid="table9">Table 9</xref>) should be selected for their high yield potential and cluster two for high resistance to coffee leaf rust in a hybridization program. Accessions in the third cluster exhibited poor agronomic performance; thus, improvement program should target upgrading these accessions. Results from the multivariate analysis both (PCA and hierarchical cluster analysis) were in conformity with the estimated genetic distance (<xref ref-type="table" rid="table8">Table 8</xref>). For example, the longest genetic distance of 5.63 between the accessions BM Jamaica 13-1066 (17) and Mysore de Mulungu (8) was also detectable from the PAC analysis. Monitoring these variations and correlations will guide us for selecting economic traits, such as resistance to pests and diseases [<xref ref-type="bibr" rid="scirp.79120-ref2">2</xref>] .</p></sec><sec id="s5"><title>5. Conclusion</title><p>Although this study provided huge information on the genetic variation and agronomic performance among different coffee accessions in Rwanda, extending it with more replications across different locations and years may lower possible environmental errors and allow estimating trait heritability index to provide coffee breeders with more reliable information on elite cultivars selection. Also, integrating this work with molecular markers would significantly boost precision breeding as some important variations can’t simply be revealed through morphological evaluation.</p></sec><sec id="s6"><title>Acknowledgements</title><p>We are very grateful to the Coffee Research Program of the Rwanda Agriculture Board, Southern Division in Huye District, Rwanda for providing research facilities and funds for this study. We also extend our special thanks to the Faculty of Agriculture, National University of Rwanda for providing research time and resources in support of the study. We greatly thank as well the School of Pastoral Agriculture Science and Technology of Lanzhou University for the research training provided under the State Key Laboratory of Grassland Agro-Ecosystems.</p></sec><sec id="s7"><title>Conflict of Interest</title><p>The authors declare that there is no conflict of interest.</p></sec><sec id="s8"><title>Cite this paper</title><p>Muvunyi, B.P., Sallah, P.Y.K., Dusengemungu, L. and Zhang, J.Y. (2017) Assessment of Genetic Diversity of Coffee Accessions in Rwanda and Its Implication for Coffee Breeding. American Journal of Plant Sciences, 8, 2461-2473. https://doi.org/10.4236/ajps.2017.810167</p></sec></body><back><ref-list><title>References</title><ref id="scirp.79120-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Ministry of Finance and Economic Planning of Rwanda, Rwanda Ministry of Agriculture and Animal Husbandry and Ministry of Trade and Industry. 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