<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJFD</journal-id><journal-title-group><journal-title>Open Journal of Fluid Dynamics</journal-title></journal-title-group><issn pub-type="epub">2165-3852</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojfd.2016.64035</article-id><article-id pub-id-type="publisher-id">OJFD-73197</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  Laminar-Turbulent Bifurcation Scenario in 3D Rayleigh-Benard Convection Problem
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nikolay</surname><given-names>M. Evstigneev</given-names></name><xref ref-type="aff" rid="aff1"><sub>1</sub></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Laboratory of Chaotic Dynamical Systems, Institute for System Analysis, Russian Academy of Science, Moscow, Russia</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>evstigneevnm@yandex.ru</email></corresp></author-notes><pub-date pub-type="epub"><day>12</day><month>10</month><year>2016</year></pub-date><volume>06</volume><issue>04</issue><fpage>496</fpage><lpage>539</lpage><history><date date-type="received"><day>October</day>	<month>12,</month>	<year>2016</year></date><date date-type="rev-recd"><day>Accepted:</day>	<month>December</month>	<year>27,</year>	</date><date date-type="accepted"><day>December</day>	<month>30,</month>	<year>2016</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  We are considering two initial-boundary value problems for Rayleigh-Benard convection in Oberbeck-Boussinesq approximation for incompressible fluid in 3D-rectangular domain with 4:4:1 geometric ratio with periodicity in two directions and cubic domain with 1:1:1 ratio and zero velocity and temperature gradient boundary conditions. For this purpose, we use two numerical method: one is a Pseudo-Spectral-Galerkin method with trigonometric-Chebyshev polynomials and the other is finite element/volume method with WENO interpolation for advection term. Numerical methods are presented shortly and are benchmarked against known DNS data and against one another (for quasi-periodic domain problem). Then we perform stability analysis using analytical expression for main stationary solutions and eigenvalue numerical analysis by applying Implicitly Restarted Arnoldi (IRA) method. The IRA is used to perform linear stability analysis, find bifurcations of stationary points and analyze eigenvalues of monodromy matrices. Thus characteristic exponents of the system for time periodic solutions (limited cycles of various periods and resonance invariant tori) are computed. We show, numerically, the existence of multistable rotes to chaos through chaotic fractal attractors, full Feigenbaum-Sharkovski cascades and multidimensional torus attractors (Landau-Hopf scenario). The existence of these attractors is shown through analysis of phase subspaces projections, Poincare sections and eigenvalue analysis of numerically computed DNS data. These attractors burst into chaos with the increase of Rayleigh number either through resonance and phase-locking or through emergence of singular chaotic attractors.
 
</p></abstract><kwd-group><kwd>Rayleigh-Benard Convection</kwd><kwd> Direct Numerical Simulation</kwd><kwd> Laminar-Turbulent Transition</kwd><kwd> Bifurcations</kwd><kwd> Nonlinear Dynamics</kwd><kwd> Turbulence</kwd><kwd> Chaos</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The bifurcation analysis of Rayleigh-Benard convection was inspired by the 0-th modal approximation―the Lorenz system. The latter is known to show chaotic behavior and is a classic example of such ODEs (formulated as the 14th Smale problem). For the rigorous proof of the Smale’s 14th Problem, you can see [<xref ref-type="bibr" rid="scirp.73197-ref1">1</xref>] . The first analysis of the phenomenon was conducted by Lord Rayleigh in [<xref ref-type="bibr" rid="scirp.73197-ref2">2</xref>] . Details about Rayleigh-Benard convection in general are described in [<xref ref-type="bibr" rid="scirp.73197-ref3">3</xref>] , where reader can find information about linear analysis, secondary flows, experiments and other useful information. The bifur- cation analysis of the full system of Navier-Stokes equations was formulated in some papers later, see [<xref ref-type="bibr" rid="scirp.73197-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref5">5</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref6">6</xref>] . Note that most of these papers are dedicated to 2D convection [<xref ref-type="bibr" rid="scirp.73197-ref6">6</xref>] or low mode problems [<xref ref-type="bibr" rid="scirp.73197-ref5">5</xref>] . Good review on the problem in general is presented in the Paul Manneville’s chapter, see [<xref ref-type="bibr" rid="scirp.73197-ref7">7</xref>] . However, a large amount of review is dedicated to intermittency with almost no focus on Landau-Hopf scenario and Feigenbaum-Sharkovskii scenario. On the other hand, we were able to obtain some results in previous papers, see [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] . We show that the problem branches itself with the transition to chaos either through bifurcations of limited cycles (so called Feigenbaum- Sharkovskii-Magnitskii scenario, see [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] ) or through Landau-Hopf scenario with the formation of high dimensional tori in the phase space. The present work is a revision of these results for cubic wall bounded domain and presentation of new results obtained for cuboid periodic domain. In this paper, we also apply analysis of Monodromy matrix eigenvalues to confirm some bifurcations and transition mechanisms.</p><p>The paper is laid out as follows. Firstly, the Initial-Boundary value problem is posed. Then, the analytical data concerning linear stability are presented in order to perform benchmark of numerical methods. The next section includes numerical methods: Pseudo-Spectral-Galerkin method, Finite Element/Volume method and the IRA ma- trix-free eigenvalue solver. We outline some properties of these methods. Then we show some benchmark results for Rayleigh-Benard convection problem. We compare eigenvalues with some known data and analytical expressions; we also compare DNS results for moderate Rayleigh numbers with known statistical results. In the last section, we show result for bifurcation analysis in the considered two domains. The final sections are discussion and conclusion.</p></sec><sec id="s2"><title>2. Initial-Boundary Value Problem</title><p>We are considering Oberbeck-Boussinesq approximation for incompressible Navier- Stokes equations, i.e. the temperature dependence of the fluid parameters is nulled for all but the density in the buoyancy term. This term varies with temperature linearly. Let the domain <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x2.png" xlink:type="simple"/></inline-formula> be a cuboid with side ratios either 4:4:1 for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x3.png" xlink:type="simple"/></inline-formula> and 1:1:1 for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x4.png" xlink:type="simple"/></inline-formula> with almost everywhere Lipschitz continuous boundaries<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x5.png" xlink:type="simple"/></inline-formula>. We are interested in the solution of the following problem:</p><p>Problem 1. For given values of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x6.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x7.png" xlink:type="simple"/></inline-formula>, find fluid velocity vector- function <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x8.png" xlink:type="simple"/></inline-formula> and scalar function of fluid temperature <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x9.png" xlink:type="simple"/></inline-formula> that satisfy the following:</p><disp-formula id="scirp.73197-formula1"><label>(1)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x10.png"  xlink:type="simple"/></disp-formula><p>equipped with initial-boundary conditions:</p><disp-formula id="scirp.73197-formula2"><label>(2)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x11.png"  xlink:type="simple"/></disp-formula><p>Here <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x12.png" xlink:type="simple"/></inline-formula> is a solution on a 2D torus, i.e. periodic, in appropriate direction, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x13.png" xlink:type="simple"/></inline-formula>-unit outward normal to the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x14.png" xlink:type="simple"/></inline-formula> boundary, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x15.png" xlink:type="simple"/></inline-formula>is the pressure;<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x16.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x17.png" xlink:type="simple"/></inline-formula> are Prandtl and Rayleigh numbers, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x18.png" xlink:type="simple"/></inline-formula> is the magnitude of gravity; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula>is the fluid thermal expansion coefficient; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula>is the length in the direction of gravitational force (<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula>in our case); <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x22.png" xlink:type="simple"/></inline-formula>is the fluid thermal con- ductivity; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x22.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x23.png" xlink:type="simple"/></inline-formula>is the fluid kinematic viscosity; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x22.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x24.png" xlink:type="simple"/></inline-formula>is the temperature on the hot plane of the domain and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x22.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x25.png" xlink:type="simple"/></inline-formula> is the temperature on the cold plane of the domain,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x22.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x26.png" xlink:type="simple"/></inline-formula>. The nondenominational form is derived if the time scale is chosen as characteristic time for momentum transfer by viscosity through the layer of height<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x19.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x21.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x22.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x26.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x27.png" xlink:type="simple"/></inline-formula>. Pressure is not explicitly defined and is treated differently for every numerical method that we use.</p></sec><sec id="s3"><title>3. Stability of the Main Solution</title><p>We are following [<xref ref-type="bibr" rid="scirp.73197-ref3">3</xref>] to show the analysis of stability for the main stationary solution. Considering a layer of fluid that is defined on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x28.png" xlink:type="simple"/></inline-formula> with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x28.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x29.png" xlink:type="simple"/></inline-formula> and boundary conditions of temperature set to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x28.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x29.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x30.png" xlink:type="simple"/></inline-formula>,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x28.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x29.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x30.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x31.png" xlink:type="simple"/></inline-formula>. The boundary conditions for velocity</p><p>can be either set up as non-slip, i.e. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x32.png" xlink:type="simple"/></inline-formula>or free slip, i.e.</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x33.png" xlink:type="simple"/></inline-formula>. Setting <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x33.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x34.png" xlink:type="simple"/></inline-formula> in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x33.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x34.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x35.png" xlink:type="simple"/></inline-formula> we get<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x33.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x34.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x35.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x36.png" xlink:type="simple"/></inline-formula>, so</p><p>the stability is defined for the linearly varying temperature profile with no dependence on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x37.png" xlink:type="simple"/></inline-formula>. So we will consider the stability in the form of normal modes with fixed wave vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x37.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x38.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula3"><label>(3)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x39.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x40.png" xlink:type="simple"/></inline-formula> is the increment and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x40.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x41.png" xlink:type="simple"/></inline-formula> is the planar waveform function being a solution to the Helmholtz equation<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x40.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x41.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x42.png" xlink:type="simple"/></inline-formula>, i.e.</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x43.png" xlink:type="simple"/></inline-formula>with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x43.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x44.png" xlink:type="simple"/></inline-formula> and reality condition <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x43.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x45.png" xlink:type="simple"/></inline-formula> and</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x46.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x47.png" xlink:type="simple"/></inline-formula> is a complex conjugate. Solving (3) for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x48.png" xlink:type="simple"/></inline-formula> one gets the following homogeneous equation [<xref ref-type="bibr" rid="scirp.73197-ref3">3</xref>] :</p><disp-formula id="scirp.73197-formula4"><label>(4)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x49.png"  xlink:type="simple"/></disp-formula><p>Applying normal mode analysis to (1) gives the following boundary conditions for (4):</p><disp-formula id="scirp.73197-formula5"><label>(5)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x50.png"  xlink:type="simple"/></disp-formula><p>The case for the free slip condition can be easily solved by choosing eigenfunctions in the form of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x51.png" xlink:type="simple"/></inline-formula> that satisfy boundary conditions. The solution of the quadratic equation for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x52.png" xlink:type="simple"/></inline-formula> is:</p><disp-formula id="scirp.73197-formula6"><label>(6)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x53.png"  xlink:type="simple"/></disp-formula><p>for the case of stability loss <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x54.png" xlink:type="simple"/></inline-formula> one can find that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x54.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x55.png" xlink:type="simple"/></inline-formula></p><p>and also see that the stability of the main solution is not dependent on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x56.png" xlink:type="simple"/></inline-formula>. However coming up with eigenfunctions for the non-slip case is much harder so we use numerical approach, since we are only interested in the value for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x56.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x57.png" xlink:type="simple"/></inline-formula> itself.</p><p>We seek solution for the critical point <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x58.png" xlink:type="simple"/></inline-formula> in the form<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x58.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x59.png" xlink:type="simple"/></inline-formula>. Plugging con- ditions into (4), one gets:</p><disp-formula id="scirp.73197-formula7"><label>(7)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x60.png"  xlink:type="simple"/></disp-formula><p>that has the following six roots:</p><disp-formula id="scirp.73197-formula8"><label>(8)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x61.png"  xlink:type="simple"/></disp-formula><p>So the solution for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x62.png" xlink:type="simple"/></inline-formula> is presented in the form:</p><disp-formula id="scirp.73197-formula9"><label>(9)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x63.png"  xlink:type="simple"/></disp-formula><p>The solution for the constants can be organized in the homogenoius system of linear equations using boundary conditions (5):</p><disp-formula id="scirp.73197-formula10"><label>(10)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x64.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula> is the column vector of the unknown constants A, B,・・・, F and matrix <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x66.png" xlink:type="simple"/></inline-formula> depends on the boundary conditions. We are not interested in finding <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x66.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x67.png" xlink:type="simple"/></inline-formula> explicitly, but rather determine the condition for the homogenoius liner system to have a solution and from that condition derive critical values of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x66.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x68.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x66.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x68.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x69.png" xlink:type="simple"/></inline-formula>, called <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x66.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x68.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x69.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x70.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x66.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x68.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x69.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x71.png" xlink:type="simple"/></inline-formula>, respectively. For the free-slip boundary the expression for the matrix is:</p><disp-formula id="scirp.73197-formula11"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x72.png"  xlink:type="simple"/></disp-formula><p>corresponding to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x73.png" xlink:type="simple"/></inline-formula>, row wise. For non-slip boundary conditions the matrix is:</p><disp-formula id="scirp.73197-formula12"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x74.png"  xlink:type="simple"/></disp-formula><p>corresponding to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x75.png" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x75.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x76.png" xlink:type="simple"/></inline-formula>, row wise. The determinant of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x75.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x76.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x77.png" xlink:type="simple"/></inline-formula> must be zero in order for the system (10) to have a nontrivial solution. So for a fixed value of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x75.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x76.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x77.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x78.png" xlink:type="simple"/></inline-formula> we must solve the nonlinear equation <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x75.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x76.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x77.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x78.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x79.png" xlink:type="simple"/></inline-formula> numerically. It is done by using Newton method as:</p><disp-formula id="scirp.73197-formula13"><label>(11)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x80.png"  xlink:type="simple"/></disp-formula><p>here the Jacobi matrix is found using analytical differentiation technique. Iterations stop if<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x81.png" xlink:type="simple"/></inline-formula>. On the other hand, knowing from the literature [<xref ref-type="bibr" rid="scirp.73197-ref3">3</xref>] the critical values of Rayleigh number, one can find a critical wavenumber <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x81.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x82.png" xlink:type="simple"/></inline-formula> using the same method for fixed<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x81.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x82.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x83.png" xlink:type="simple"/></inline-formula>. It should be noticed, however, that the solution should be pure real despite that the roots are complex. In <xref ref-type="fig" rid="fig1">Figure 1</xref> we show neutral curves for</p><fig id="fig1"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref></label><caption><title> Neutral curves for free-slip and non-slip boundary conditions. Dot plots are numerically calculated points of first bifurcation for given <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x85.png" xlink:type="simple"/></inline-formula> and non-slip boundary conditions for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x85.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x86.png" xlink:type="simple"/></inline-formula>. Asterisks for Fourier-Galerkin method and circles for Finite Element/Volume Method</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x84.png"/></fig><p>both cases of boundary conditions with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x87.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x87.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x88.png" xlink:type="simple"/></inline-formula>. So one can verify the appearance of the first bifurcation in numerical methods.</p></sec><sec id="s4"><title>4. Numerical Methods</title><p>In this section we give information about numerical methods that are used to solve the problem.</p><sec id="s4_1"><title>4.1. Pseudo-Spectral-Galerkin Method</title><p>The Pseudo-Spectral-Galerkin Fourier-Chebyshev method is applied to the domain <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x89.png" xlink:type="simple"/></inline-formula> (Fourier-Galerkin method or FGM for short). All vector-functions in (1) are expanded by the divergence free basis functions<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x89.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x90.png" xlink:type="simple"/></inline-formula>, constructed analogues to [<xref ref-type="bibr" rid="scirp.73197-ref5">5</xref>] :</p><disp-formula id="scirp.73197-formula14"><label>(12)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x91.png"  xlink:type="simple"/></disp-formula><p>We can check that the following bases functions are analyticaly divergence free, i.e.<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x92.png" xlink:type="simple"/></inline-formula>, no matter the expressions for them. For the case of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x92.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x93.png" xlink:type="simple"/></inline-formula> we use the following set of scalar bases functions:</p><disp-formula id="scirp.73197-formula15"><label>(13)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x94.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x95.png" xlink:type="simple"/></inline-formula>. We use Chebyshev polynomials in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x95.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x96.png" xlink:type="simple"/></inline-formula> direction for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x95.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x96.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x97.png" xlink:type="simple"/></inline-formula>, as in [<xref ref-type="bibr" rid="scirp.73197-ref5">5</xref>] for 2D and 3D Dirichlet box cases. We use the relation for Chebyshev polynomials of the first and the second kind to get:</p><disp-formula id="scirp.73197-formula16"><label>(14)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x98.png"  xlink:type="simple"/></disp-formula><p>In order to meet homogeneous Dirichlet conditions we must have:</p><disp-formula id="scirp.73197-formula17"><label>(15)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x99.png"  xlink:type="simple"/></disp-formula><p>With all this together we get the following scalar basis functions in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x100.png" xlink:type="simple"/></inline-formula> direction:</p><disp-formula id="scirp.73197-formula18"><label>(16)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x101.png"  xlink:type="simple"/></disp-formula><p>It is a straightforward way to check that (16) and, hence, (12) are complied with (14) and (15). Such functions form a basis in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x102.png" xlink:type="simple"/></inline-formula> that we use to approximate the solution of the initial-boundary value problem (2) for (1). Note, that the basis (12) is not orthogonal in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x103.png" xlink:type="simple"/></inline-formula> direction but orthogonal in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x103.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x104.png" xlink:type="simple"/></inline-formula> directions due to the use of Fourier basis functions. It can be shown by the construction of the Mass matrix using an <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x103.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x104.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x105.png" xlink:type="simple"/></inline-formula> projection.</p><p>From here we turn our attention to the truncated series for basis functions, so that the problem can be solved on the computer. We assume that there are <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x106.png" xlink:type="simple"/></inline-formula> number of polynomial modes, i.e. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x106.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x107.png" xlink:type="simple"/></inline-formula>is the number of Fourier modes and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x106.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x107.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x108.png" xlink:type="simple"/></inline-formula> is the number of Chebyshev polynomials in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x106.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x107.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x108.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x109.png" xlink:type="simple"/></inline-formula> direction. Please note that the number of degrees of freedom is lesser since all complex coefficients for Fourier modes are subject to reality condition, i.e.<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x106.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x107.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x108.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x109.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x110.png" xlink:type="simple"/></inline-formula>. So the total number of degrees of freedom is<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x106.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x107.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x108.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x109.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x110.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x111.png" xlink:type="simple"/></inline-formula>. In this case the basis scalar components (13) are rewritten as:</p><disp-formula id="scirp.73197-formula19"><label>(17)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x112.png"  xlink:type="simple"/></disp-formula><p>Since the basis is divergence free and the mean flow through periodic boundaries is zero, this implies that the integral of velocity over these boundaries is zero. In this case it is straightforward to show that the pressure is eliminated from (1) by projecting pressure gradient into the divergence free functional subspace that is formed by the span of divergence free basis functions.</p><p>We use the following scalar basis functions for the temperature expand:</p><disp-formula id="scirp.73197-formula20"><label>(18)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x113.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x114.png" xlink:type="simple"/></inline-formula> are constructed such that boundary conditions for temperature are satisfied:</p><disp-formula id="scirp.73197-formula21"><label>(19)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x115.png"  xlink:type="simple"/></disp-formula><p>With the correction term <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x116.png" xlink:type="simple"/></inline-formula> we satisfy boundary conditions for temperature</p><p>on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x117.png" xlink:type="simple"/></inline-formula>.</p><p>The cost of the full Bubnov-Galerkin method being applied to Equation (1) is of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x118.png" xlink:type="simple"/></inline-formula> due to the non-linear term. These multiplication terms become con- volution in the functional space thus causing multiplications of tensors rank 3. Such computation complexity is very limiting. In order to reduce the computational cost of calculations we use two stage transfer from physical space to functional space and use Fourier collocations with pseudo-spectral approach in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x118.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x119.png" xlink:type="simple"/></inline-formula> direction.</p><p>First we span the functions in (1) using Discrete Fourier Transfer (DFT) in regular grid points, forming the following system (taking into account divergence-free nature of basis):</p><disp-formula id="scirp.73197-formula22"><label>(20)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x120.png"  xlink:type="simple"/></disp-formula><p>with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x121.png" xlink:type="simple"/></inline-formula> being a convolution term. All coefficients <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x121.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x122.png" xlink:type="simple"/></inline-formula> with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x121.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x122.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x123.png" xlink:type="simple"/></inline-formula> being DFT coefficients.</p><p>For every <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x124.png" xlink:type="simple"/></inline-formula> point we apply Bubnov-Galerkin projection in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x124.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x125.png" xlink:type="simple"/></inline-formula> direction:</p><disp-formula id="scirp.73197-formula23"><label>(21)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x126.png"  xlink:type="simple"/></disp-formula><p>where we denote:</p><disp-formula id="scirp.73197-formula24"><label>(22)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x127.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula25"><label>(23)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x128.png"  xlink:type="simple"/></disp-formula><p>as projections of DFT basis corrected coefficients to polynomial space and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x129.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x130.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x130.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x131.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x130.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x131.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x132.png" xlink:type="simple"/></inline-formula>are mass and diffusion matrices for velocities and temperature, respectively for every point<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x130.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x131.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x132.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x133.png" xlink:type="simple"/></inline-formula>. Matrix sizes are <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x130.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x131.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x132.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x133.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x134.png" xlink:type="simple"/></inline-formula> and they are formed as:</p><disp-formula id="scirp.73197-formula26"><label>(24)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x135.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula27"><label>(25)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x136.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula28"><label>(26)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x137.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula29"><label>(27)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x138.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula> and minus sign in diffusion matrices is due to the in- tegration by parts and zero boundary conditions. Since these matrices are independent of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula> indexes, we can apply them for each point <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula> in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula>-direction. The mass matrices are full since the basis we use is not orthogonal but all matrices are not singular. It can be proved by the fact that we are using linear combinations of polynomials that form basis in<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x143.png" xlink:type="simple"/></inline-formula>. So the vectors are linear intendant and so the matrices are positive-definite, hence, invertible and the system can be solved for unknown coefficients<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x144.png" xlink:type="simple"/></inline-formula>,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x145.png" xlink:type="simple"/></inline-formula>. In order to perform integration we use exact symbolic integrals for diffusion and inverse mass matrices that are calculated in Wolfram Mathematica and stored for further use in the program. We use Gauss- Chebyshev quadrature in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x145.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x146.png" xlink:type="simple"/></inline-formula> direction. This quadrature is exact for polynomials of degree <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x145.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x146.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x147.png" xlink:type="simple"/></inline-formula> and can be efficiently used. We use it to perform projection from domain to image and back for (22), (23) and we find DFT divergence-free coefficients at points <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x139.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x145.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x146.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x147.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x148.png" xlink:type="simple"/></inline-formula> as</p><disp-formula id="scirp.73197-formula30"><label>(28)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x149.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula31"><label>(29)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x150.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x151.png" xlink:type="simple"/></inline-formula> points are Gauss-Chebyshev quadrature points and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x152.png" xlink:type="simple"/></inline-formula>,</p><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x153.png" xlink:type="simple"/></inline-formula> so boundary points belong to the boundary.</p><p>The nonlinear (multiplication) term is calculated using pseudo-spectral approach. We calculate derivatives in polynomial space, then return to the physical space at specific points and calculate multiplication in physical space with computational difficulty<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x154.png" xlink:type="simple"/></inline-formula>. Having known coefficients<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x154.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x155.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x154.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x155.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x156.png" xlink:type="simple"/></inline-formula>at time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x154.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x155.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x156.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x157.png" xlink:type="simple"/></inline-formula> we perform the following steps to calculate <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x154.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x155.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x156.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x157.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x158.png" xlink:type="simple"/></inline-formula> (the advection term in scalar energy equation is calculated analogously).</p><p>1) Calculate derivatives in functional spaces:</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x159.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x159.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x160.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x159.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x160.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x161.png" xlink:type="simple"/></inline-formula>,</p><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x162.png" xlink:type="simple"/></inline-formula> is the differentiation matrix for our basis functions in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x162.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x163.png" xlink:type="simple"/></inline-formula> direction.</p><p>2) Increase the size of arrays for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x164.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x165.png" xlink:type="simple"/></inline-formula> in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x165.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x166.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x165.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x166.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x167.png" xlink:type="simple"/></inline-formula> direction by <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x165.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x166.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x167.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x168.png" xlink:type="simple"/></inline-formula> and fill added elements with zeros, so we have arrays with sizes of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x165.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x166.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x167.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x168.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x169.png" xlink:type="simple"/></inline-formula>.</p><p>3) Return from functional space to physical space step by step to get <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x170.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x170.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x171.png" xlink:type="simple"/></inline-formula>:</p><p>・ use (28) for every <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x172.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x172.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x173.png" xlink:type="simple"/></inline-formula> to get<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x172.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x173.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x174.png" xlink:type="simple"/></inline-formula>;</p><p>・ Apply inverse DFT for every plane at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x175.png" xlink:type="simple"/></inline-formula>.</p><p>4) Calculate multiplication in physical space at every point to get:</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x176.png" xlink:type="simple"/></inline-formula>.</p><p>5) Return back to Fourier space using DFT for every plane in<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x177.png" xlink:type="simple"/></inline-formula>. Truncate series to the size <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x178.png" xlink:type="simple"/></inline-formula> by removing modes that are padded by zeros earlier to get <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x178.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x179.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x178.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x179.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x180.png" xlink:type="simple"/></inline-formula>.</p><p>6) Apply (22) using Gauss-Chebyshev quadrature to get <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x181.png" xlink:type="simple"/></inline-formula> where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x181.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x182.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x181.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x182.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x183.png" xlink:type="simple"/></inline-formula>and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x181.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x182.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x183.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x184.png" xlink:type="simple"/></inline-formula>.</p><p>This leads to no aliasing of frequencies.</p><p>The following approach requires less operations then the exact Bubnov-Galerkin method of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula> [<xref ref-type="bibr" rid="scirp.73197-ref9">9</xref>] . The most operation-hungry part is the nonlinear term calculation using 3/2 padding. Now we assume that FFT can be used for DFT with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula> operation, for example one can use fftw or cufft on GPU. Calculation of derivatives is done using<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula>. We need <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula> ope- rations to perform DFT, then we need <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula> operations to get transfer in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x190.png" xlink:type="simple"/></inline-formula>-direction. Multiplication in physical space requires <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x190.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x191.png" xlink:type="simple"/></inline-formula> operations. And return to the image from the domain of the mapping requires the same difficulty as for the image to domain transfer. So we get maximum difficulty as <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x190.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x192.png" xlink:type="simple"/></inline-formula>, and for most practical use (say<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x190.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x192.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x193.png" xlink:type="simple"/></inline-formula>) the limiting factor would be <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x190.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x192.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x193.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x194.png" xlink:type="simple"/></inline-formula> so we assume that our method requires <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x186.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x190.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x192.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x193.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x194.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x195.png" xlink:type="simple"/></inline-formula> operations for every time step.</p><p>Explicit Runge-Kutta 4 (RK-4) method that is used to integrate the semi-discrete system (21) in time. In order to satisfy stability condition we analyze spectra of the linear operator and bounds for the nonlinear part and derive stability condition. A necessary condition for stability by the linear change of mapping (by the change of the time step) is the location of all discrete spectra of the spacial operator inside the RK-4 stability region on a complex plane. The discrete Fourier spectra has a standard estimate [<xref ref-type="bibr" rid="scirp.73197-ref9">9</xref>] and spectral norm for Chebyshev matrices is used for the estimate. This part is beyond the scope of the paper.</p></sec><sec id="s4_2"><title>4.2. Finite Element/Volume Method</title><p>We consider another method that is applied in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x196.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x196.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x197.png" xlink:type="simple"/></inline-formula> domains. It uses nodal Finite Element approach to reconstruct pressure and Finite Volume/Difference method for the reset part of the equations. Finite element method uses values of pressure and velocity in vertexes of elements to form matrix equations. Finite volume/difference method uses values of velocities in centers of elements to approximate integral/ differential operators. So this is a combination of finite element method and finite volume method that we call “FEM” for short.</p><p>We start with discretization of Stokes operator:</p><disp-formula id="scirp.73197-formula32"><label>(30)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x198.png"  xlink:type="simple"/></disp-formula><p>in bounded domain <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x199.png" xlink:type="simple"/></inline-formula> with appropriate initial-boundary conditions. We use some discretization method that we discuss later and projection method (see [<xref ref-type="bibr" rid="scirp.73197-ref10">10</xref>] ) to translate (30) into:</p><disp-formula id="scirp.73197-formula33"><label>(31)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x200.png"  xlink:type="simple"/></disp-formula><p>Here <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula> is a mass matrix; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x202.png" xlink:type="simple"/></inline-formula>is a gradient matrix; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x203.png" xlink:type="simple"/></inline-formula>is a diffusion matrix and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x203.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x204.png" xlink:type="simple"/></inline-formula> is a divergence matrix. We introduce time slices with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x203.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x204.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x205.png" xlink:type="simple"/></inline-formula> being <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x203.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x204.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x205.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x206.png" xlink:type="simple"/></inline-formula>-the time slice with time-step <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x203.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x204.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x205.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x206.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x207.png" xlink:type="simple"/></inline-formula> and derive the following system:</p><disp-formula id="scirp.73197-formula34"><label>(32)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x208.png"  xlink:type="simple"/></disp-formula><p>Since <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x209.png" xlink:type="simple"/></inline-formula> is unknown on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x209.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x210.png" xlink:type="simple"/></inline-formula>-th time slice, we split the system as:</p><disp-formula id="scirp.73197-formula35"><label>(33)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x211.png"  xlink:type="simple"/></disp-formula><p>and introduce velocity correction vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x212.png" xlink:type="simple"/></inline-formula> and scalar potential function<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x212.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x213.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula36"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x214.png"  xlink:type="simple"/></disp-formula><p>hence:</p><disp-formula id="scirp.73197-formula37"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x215.png"  xlink:type="simple"/></disp-formula><p>so<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x216.png" xlink:type="simple"/></inline-formula>, and we get correction equation for the potential function<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x216.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x217.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula38"><label>(34)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x218.png"  xlink:type="simple"/></disp-formula><p>where matrix <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x219.png" xlink:type="simple"/></inline-formula> is a Schur complement. After the solution of (34) we correct velocity and pressure functions in such way, that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x219.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x220.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula39"><label>(35)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x221.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula> is a parameter. This projection method is another way to write Helmholtz-Hodge decomposition for specific type of equations. The whole step of solution consists of using three steps (33), (34), (35). In general this results in first order of approximation for (30) in time. The stability and consistence of the method depend on the discretization. It is known that the discretization must obey Ladijenskaya- Babuska-Brezzi (LBB) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula>condition in order to be stable and consistent. In case of the provided approximation it means that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula> (corre- sponds to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula> condition) and that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula> (corresponds to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula> condition), where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x228.png" xlink:type="simple"/></inline-formula> is a condition number and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x228.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x229.png" xlink:type="simple"/></inline-formula> is a discretization parameter (e.g. grid size). In general one usually takes<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x228.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x230.png" xlink:type="simple"/></inline-formula>, chooses mixed finite element ap- proximation (for finite element methods) or staggered grid (for finite difference approximation) and changes matrix <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x228.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x231.png" xlink:type="simple"/></inline-formula> to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x228.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x231.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x232.png" xlink:type="simple"/></inline-formula> that can be easily inverted, e.g.<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x223.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x225.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x226.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x227.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x228.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x231.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x232.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x233.png" xlink:type="simple"/></inline-formula>. Here we use different strategy that is dealing with different approximations for different operators.</p><p>Let us introduce rectangular cuboids <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula> that from a 3D tessellation of a rectan- gular domain<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula>, such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x237.png" xlink:type="simple"/></inline-formula> is a multi index with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x238.png" xlink:type="simple"/></inline-formula> being a center of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x239.png" xlink:type="simple"/></inline-formula>. We introduce another set of tessellation <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x240.png" xlink:type="simple"/></inline-formula> that is constructed from swapping central nodes and vertexes, thus each vertex of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x240.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x241.png" xlink:type="simple"/></inline-formula> becomes a center for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x235.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x240.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x241.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x242.png" xlink:type="simple"/></inline-formula> and vice versa.</p><p>We define basis functions in an element<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x243.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x243.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x244.png" xlink:type="simple"/></inline-formula> can be <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x243.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x244.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x245.png" xlink:type="simple"/></inline-formula> or<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x243.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x244.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x245.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x246.png" xlink:type="simple"/></inline-formula>, as follows:</p><disp-formula id="scirp.73197-formula40"><label>(36)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x247.png"  xlink:type="simple"/></disp-formula><p>Now we use the following expansion in this element space for a scalar function<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x248.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula41"><label>(37)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x249.png"  xlink:type="simple"/></disp-formula><p>Now we consider set of points <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x250.png" xlink:type="simple"/></inline-formula> formed by the centers of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x250.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x251.png" xlink:type="simple"/></inline-formula> or vertexes of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x250.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x251.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x252.png" xlink:type="simple"/></inline-formula>.</p><p>Such elements can be considered as finite volumes, i.e.<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x253.png" xlink:type="simple"/></inline-formula>. We now</p><p>define the following differential operators: <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula>and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula> in space of nodal finite elements<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula>and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula> in space of finite volumes<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula>, we use Laplace operator <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula> for the approximation of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula> and identity matrix for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x262.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x263.png" xlink:type="simple"/></inline-formula>. Define projection of nodal operator to central finite volume point as <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x263.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x264.png" xlink:type="simple"/></inline-formula> and projection of central finite difference/volume operator to nodes as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x263.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x264.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x265.png" xlink:type="simple"/></inline-formula>. The first operation is performed using (37) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x263.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x264.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x265.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x266.png" xlink:type="simple"/></inline-formula> and the second operation is an inverse of (37) with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x257.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x260.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x263.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x264.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x265.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x266.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x267.png" xlink:type="simple"/></inline-formula>. In this case the scheme can be written as follows:</p><disp-formula id="scirp.73197-formula42"><label>(38)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x268.png"  xlink:type="simple"/></disp-formula><p>In this work we use compact finite difference scheme of 4-th order to approximate <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x269.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x269.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x270.png" xlink:type="simple"/></inline-formula> using method of alternating directions. The approximation of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x269.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x270.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x271.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x269.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x270.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x271.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x272.png" xlink:type="simple"/></inline-formula> is done using Bubnov-Galerkin projection (integration over<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x269.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x270.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x271.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x272.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x273.png" xlink:type="simple"/></inline-formula>), e.g. for the second equation in (38):</p><disp-formula id="scirp.73197-formula43"><label>(39)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x274.png"  xlink:type="simple"/></disp-formula><p>Inserting (37) into (39) and doing integration by parts:</p><disp-formula id="scirp.73197-formula44"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x275.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x276.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x276.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x277.png" xlink:type="simple"/></inline-formula>are coefficients of expansion for Dirichlet and Neumann boundary conditions and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x276.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x277.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x278.png" xlink:type="simple"/></inline-formula> are coefficients of divergence operator projection into the space of finite elements. Other operators are derived analogously.</p><p>It is a straightforward way to check the BBL condition (we don’t consider this in the papaer). Trivial kernel of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x279.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x279.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x280.png" xlink:type="simple"/></inline-formula> is proved by considering space of finite elements and 4-th order compact differences schemes. The condition number of finite element approximation can be estimated from the space of finite elements and can be shown that it has a marginal bound. Now it is a straightforward way to return to Navier-Stokes equations by applying some approximation for the nonlinear term in (38) (defined bellow as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x279.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x281.png" xlink:type="simple"/></inline-formula>). We use 7-th order WENO scheme that has good spectral properties and guaranties TVB behavior of the solution (on each WENO stage we use Runge-Kutta 3rd order SSP method [<xref ref-type="bibr" rid="scirp.73197-ref11">11</xref>] ). In order to increase the temporal accuracy we also use Runge-Kutta 3rd order explicit method [<xref ref-type="bibr" rid="scirp.73197-ref11">11</xref>] for which the projection step (38) is applied on every stage. The stability of the method is deduced from CFL condition since diffusion is considered in implicit way. The usage of this type of finite elements gives one more positive result. There is no artificial boundary layer near wall boundary. Equation on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x279.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x282.png" xlink:type="simple"/></inline-formula> requires zero Neumann boundary conditions on the wall, but in this FEM setup it just means skipping values of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x279.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x282.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x283.png" xlink:type="simple"/></inline-formula> on zero Neumann boundary. The same is true for the pressure gradient approximation. Then the total scheme for (1) is given as:</p><disp-formula id="scirp.73197-formula45"><label>(40)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x284.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula46"><label>(41)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x285.png"  xlink:type="simple"/></disp-formula></sec><sec id="s4_3"><title>4.3. Solution of the Eigenvalue Problem</title><p>We briefly give description of the matrix free eigenvalue solver that is used for the problem. More information about this approach can be found in many papers, for example [<xref ref-type="bibr" rid="scirp.73197-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref13">13</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref14">14</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref15">15</xref>] . Considering discrete systems (21) and (41). Let us consider another discrete systems for small temporal perturbations <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x286.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x286.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x287.png" xlink:type="simple"/></inline-formula> formed in the vector:</p><disp-formula id="scirp.73197-formula47"><label>(42)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x288.png"  xlink:type="simple"/></disp-formula><p>Inserting those into discrete systems and linearizing one can gets the following set of equations:</p><disp-formula id="scirp.73197-formula48"><label>(43)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x289.png"  xlink:type="simple"/></disp-formula><p>where</p><disp-formula id="scirp.73197-formula49"><label>(44)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x290.png"  xlink:type="simple"/></disp-formula><p>where</p><disp-formula id="scirp.73197-formula50"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x291.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.73197-formula51"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x292.png"  xlink:type="simple"/></disp-formula><p>for Fourier-Galerkin system and</p><disp-formula id="scirp.73197-formula52"><label>(45)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x293.png"  xlink:type="simple"/></disp-formula><p>for FEM system. Here <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x294.png" xlink:type="simple"/></inline-formula> stands for linearization of the operator (40). The size of the perturbation vector is <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x294.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x295.png" xlink:type="simple"/></inline-formula> and is used in the Implicitly Restarted Arnoldi (IRA) method. Note that if we are using Fourier method, this vector includes real and imaginary parts of Fourier modes that are treated as real values and the size changes to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x294.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x295.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x296.png" xlink:type="simple"/></inline-formula>. The system (43) is used as an operator <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x294.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x295.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x296.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x297.png" xlink:type="simple"/></inline-formula> that maps the vector (42) as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x294.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x295.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x296.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x297.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x298.png" xlink:type="simple"/></inline-formula>. These perturbations are automatically divergence-free since we are using divergence-free basis for Fourier-Galerkin method. For FEM method these perturbations are guaranteed to be divergence-free since we are applying projection algorithm with pressure initialized during the projection. There’s no need to introduce pressure perturbations in both cases. The algorithm for IRA to find eigenvalues of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x294.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x295.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x296.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x297.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x298.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x299.png" xlink:type="simple"/></inline-formula> is based on [<xref ref-type="bibr" rid="scirp.73197-ref16">16</xref>] and goes as follows:</p><p>1) Initialization. Initialize vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula> with different random values. Then normalize the vector, so<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x301.png" xlink:type="simple"/></inline-formula>. Select number of eigenvalues <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x301.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x302.png" xlink:type="simple"/></inline-formula> that are desired and number of additional vectors <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x301.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x302.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x303.png" xlink:type="simple"/></inline-formula> for the implicit procedure, so the dimension of Krylov subspace is <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x301.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x302.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x303.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x304.png" xlink:type="simple"/></inline-formula> and we set variable <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x301.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x302.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x303.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x304.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x305.png" xlink:type="simple"/></inline-formula> and vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x301.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x302.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x303.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x304.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x305.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x306.png" xlink:type="simple"/></inline-formula> which are defined later.</p><p>2) Arnoldi Step. We form the Krylov subspace as <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x307.png" xlink:type="simple"/></inline-formula> where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x307.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x308.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x307.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x308.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x309.png" xlink:type="simple"/></inline-formula>. We use the following process:</p><p>if <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x310.png" xlink:type="simple"/></inline-formula> equals to 0 do</p><p>a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x311.png" xlink:type="simple"/></inline-formula>,</p><p>b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x312.png" xlink:type="simple"/></inline-formula>,</p><p>c)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x313.png" xlink:type="simple"/></inline-formula>,</p><p>d) Gram-Schmidt process correction:<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x314.png" xlink:type="simple"/></inline-formula>, until<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x314.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x315.png" xlink:type="simple"/></inline-formula>,</p><p>e)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x316.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x316.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x317.png" xlink:type="simple"/></inline-formula> is an upper Hessenberg matrix and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x316.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x317.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x318.png" xlink:type="simple"/></inline-formula>,</p><p>continue</p><disp-formula id="scirp.73197-formula53"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x319.png"  xlink:type="simple"/></disp-formula><p>a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x320.png" xlink:type="simple"/></inline-formula>,</p><p>b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x321.png" xlink:type="simple"/></inline-formula>,</p><p>c)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x322.png" xlink:type="simple"/></inline-formula>,</p><p>d)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x323.png" xlink:type="simple"/></inline-formula>,</p><p>e)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x324.png" xlink:type="simple"/></inline-formula>,</p><p>f) Gram-Schmidt process correction:<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x325.png" xlink:type="simple"/></inline-formula>, while<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x325.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x326.png" xlink:type="simple"/></inline-formula>,</p><p>g)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x327.png" xlink:type="simple"/></inline-formula>.</p><p>This precess generates the following decomposition:</p><disp-formula id="scirp.73197-formula54"><label>(46)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x328.png"  xlink:type="simple"/></disp-formula><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula>: the last vector after the application of step 2,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula>. If the last value<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula>, then vectors in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula> are linearly dependent and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula> is invariant under the application of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x334.png" xlink:type="simple"/></inline-formula>. The process stops with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x334.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x335.png" xlink:type="simple"/></inline-formula> and eigenvectors (eigenvalues) of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x334.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x335.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x336.png" xlink:type="simple"/></inline-formula> are the eigenvectors (eigenvalues) of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x334.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x335.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x336.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x337.png" xlink:type="simple"/></inline-formula>. If the process is not stopped (which is usually true), then continue to 2. Find eigenvalues of Hessenberg matrix<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x334.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x335.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x336.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x337.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x338.png" xlink:type="simple"/></inline-formula>, sort them in an appropriate order (either maximum real part or maximum magnitude in our applications). Perform QR algorithm with shifts for H using polynomials with number of shifts<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x329.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x330.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x331.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x332.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x333.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x334.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x335.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x336.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x337.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x338.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x339.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula55"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x340.png"  xlink:type="simple"/></disp-formula><p>a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x341.png" xlink:type="simple"/></inline-formula>,</p><p>b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x342.png" xlink:type="simple"/></inline-formula>.</p><p>Set<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x343.png" xlink:type="simple"/></inline-formula>. Note that at this point <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x343.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x344.png" xlink:type="simple"/></inline-formula> since some of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x343.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x344.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x345.png" xlink:type="simple"/></inline-formula>. Apply shifts:</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x346.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x346.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x347.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x346.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x347.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x348.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x349.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x350.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x351.png" xlink:type="simple"/></inline-formula>.</p><p>At this point we have matrices<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula>with additional value <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula> and let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula> be an eigenvalue of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula> with associated normalized eigenvector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula>. We denote <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula> as a Ritz vector of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula> and Ritz value<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x360.png" xlink:type="simple"/></inline-formula>, both associated with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x360.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x361.png" xlink:type="simple"/></inline-formula>. For these Ritz variables we have [<xref ref-type="bibr" rid="scirp.73197-ref16">16</xref>] :<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x360.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x361.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x362.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x360.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x361.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x362.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x363.png" xlink:type="simple"/></inline-formula> is the last component of the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x360.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x361.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x362.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x363.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x364.png" xlink:type="simple"/></inline-formula> eigenvector. So, while<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x352.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x355.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x356.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x357.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x358.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x360.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x361.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x362.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x363.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x364.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x365.png" xlink:type="simple"/></inline-formula>, goto 2.</p><p>In order to find eigenvalues of Jacobi matrix we consider the system (43) with zero temporal derivative. So the system (43) is called on every stage of Arnoldi process by applying the linearized equations to the vector in Arnoldi step. If we are computing eigenvalues of Monodromy matrix then the system is applied as follows. Let the system (43) have a periodic solution with period<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x366.png" xlink:type="simple"/></inline-formula>. Then the system is formed as</p><disp-formula id="scirp.73197-formula56"><label>(47)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x367.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x368.png" xlink:type="simple"/></inline-formula> is a state transition operator or a Monodromy matrix. To find <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x368.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x369.png" xlink:type="simple"/></inline-formula> in a matrix-free way we integrate the linearized system in time for a period<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x368.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x369.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x370.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula57"><label>(48)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x371.png"  xlink:type="simple"/></disp-formula><p>so,</p><disp-formula id="scirp.73197-formula58"><label>(49)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x372.png"  xlink:type="simple"/></disp-formula><p>Now we apply (48) for the input vector in Arnoldi step of IRA, while integral is evaluated by applying the selected time stepper.</p></sec><sec id="s4_4"><title>4.4. Implementation Details</title><p>Our goal is to perform direct numerical simulation (DNS) of problems and trace transition from initial stationary point in the phase space (main solution) to the chaos through cascades of bifurcations. In order to detect and clarify bifurcations we use the analysis of eigenvalues of Jacobi and Monodromy matrices and phase portraits with Poincare sections. The calculation of the whole IRA algorithm and achievement of the statistically quasi-periodic solution regimes for relatively high <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x373.png" xlink:type="simple"/></inline-formula> numbers require significant computational power. We use the same idea as in [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] to adapt number of harmonics or number of elements for the problem during the analysis of bifurcations. The control of the accuracy is done by the analysis of the energy spectrum for the whole simulation time. We define the correlation tensor</p><disp-formula id="scirp.73197-formula59"><label>(50)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x374.png"  xlink:type="simple"/></disp-formula><p>and its Fourier transfer</p><disp-formula id="scirp.73197-formula60"><label>(51)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x375.png"  xlink:type="simple"/></disp-formula><p>For the discrete problem we are using FFT to calculate (51). In order to get the energy spectra we integrate over the spherical shell:</p><disp-formula id="scirp.73197-formula61"><label>(52)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x376.png"  xlink:type="simple"/></disp-formula><p>that becomes a summation for the discrete problem. Then we check, that for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x377.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.73197-formula62"><label>(53)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x378.png"  xlink:type="simple"/></disp-formula><p>with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula> being the size of FFT discretization. The last relation (53) in physical interpretation means a track of the solution to be in a deep dissipation regime. It is an overdiscretization from a standard DNS point of view, however it is essential to obtain complex bifurcations in near chaos region. For all calculations we are using<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula>modes for Fourier-Galerkin method and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula> elements for FEM method in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula> domain and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula> elements in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x385.png" xlink:type="simple"/></inline-formula> domain. During the IRA process we find 6 or 10 leading eigenvalues (i.e.<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x385.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x386.png" xlink:type="simple"/></inline-formula>) and use 94 or 90 additional Krylov basis vectors, so<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x385.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x386.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x387.png" xlink:type="simple"/></inline-formula>, and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x385.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x386.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x387.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x388.png" xlink:type="simple"/></inline-formula>, thus <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x385.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x386.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x387.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x388.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x389.png" xlink:type="simple"/></inline-formula> and Hessenberg matrix size is<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x380.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x384.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x385.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x386.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x387.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x388.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x389.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x390.png" xlink:type="simple"/></inline-formula>.</p><p>In order to accelerate computations we are using multiple Graphic Processor Units (multiGPU). The GPUs used are k40 NVIDIA GPUs, all programs are implemented on C++ with CUDA C. The application of DFTs is done by the CUFFT library on 2 or 4 GPUs. The matrix vector products are conducted using MAGMA library. The solution of the Poisson Equation (39) is carried out using geometric multigrid approach [<xref ref-type="bibr" rid="scirp.73197-ref17">17</xref>] . The IRA algorithm is using dot product, matrix-vector operations and matrix matrix operations from MAGMA library across multiGPUs, wheres QR routine for the upper Hessenberg matrix is taken from LAPACK. The visualization is done using GMSH [<xref ref-type="bibr" rid="scirp.73197-ref18">18</xref>] , Gnuplot and LibreOffice, simple calculations are done in MATLAB.</p></sec></sec><sec id="s5"><title>5. Benchmarks</title><p>At first we perform the verification of our methods vs. known results. The first benchmark is to obtain the neutral curve by applying different <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x391.png" xlink:type="simple"/></inline-formula> as it is done in Section 3. For this purpose we consider domain <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x391.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x392.png" xlink:type="simple"/></inline-formula> with the following perturbations of temperature:</p><disp-formula id="scirp.73197-formula63"><label>(54)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x393.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula> is a given critical wave number, and we take<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x395.png" xlink:type="simple"/></inline-formula>. The results for numerical methods are brought in <xref ref-type="fig" rid="fig1">Figure 1</xref> with comparison to the linear stability analysis. We can see that maximum deviation for FEM (<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x396.png" xlink:type="simple"/></inline-formula>elements) method is about 11.2% and for FGM is about 6.5% (<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x396.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x397.png" xlink:type="simple"/></inline-formula>modes). Please note that further increase of degrease of freedom did not improve the results much. We are able to trace exact points of transition with the application of the IRA solver. The results for leading eigenvalues are brought into <xref ref-type="table" rid="table1">Table 1</xref>. Please note that for both cases we have leading eigenvalues of multiplicity two. So the supercritical pitchfork bifurcation is observed, that complies with well known data about Rayleigh-Benard convection. In physical space we can observe the formation of rolls that run parallel to one of the axis <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x396.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x397.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x398.png" xlink:type="simple"/></inline-formula> or<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x396.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x397.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x398.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x399.png" xlink:type="simple"/></inline-formula>, depending on the direction of perturbation vector in (54). Velocity vectors for these rolls are shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>. One can observe small amplitude of velocity but the amplitude increases with the increase of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x394.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x396.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x397.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x398.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x399.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x400.png" xlink:type="simple"/></inline-formula>, with the formation of a mushroom type distribution for temperature.</p><p>Velocity vectors and temperature distribution for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x401.png" xlink:type="simple"/></inline-formula> are shown in <xref ref-type="fig" rid="fig3">Figure 3</xref> for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x401.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x402.png" xlink:type="simple"/></inline-formula> obtained with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x401.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x402.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x403.png" xlink:type="simple"/></inline-formula> elements using FEM. The critical pertur-</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Leading eigenvalues for the first bifurcation for four critical wave numbers</title></caption><table><tbody><thead><tr><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x404.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" >Ra</th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x405.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x406.png" xlink:type="simple"/></inline-formula></th></tr></thead><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" >1950</td><td align="center" valign="middle" >−0.27055609</td><td align="center" valign="middle" >−0.12345012</td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" >2000</td><td align="center" valign="middle" >−0.18726300</td><td align="center" valign="middle" >0.00919971</td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" >2150</td><td align="center" valign="middle" >0.06261627</td><td align="center" valign="middle" >−</td></tr><tr><td align="center" valign="middle" >3.117</td><td align="center" valign="middle" >1700</td><td align="center" valign="middle" >−0.02352221</td><td align="center" valign="middle" >−0.08692309</td></tr><tr><td align="center" valign="middle" >3.117</td><td align="center" valign="middle" >1750</td><td align="center" valign="middle" >0.09408884</td><td align="center" valign="middle" >0.01133009</td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >1950</td><td align="center" valign="middle" >−0.09077777</td><td align="center" valign="middle" >−0.19987722</td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >2000</td><td align="center" valign="middle" >0.06436605</td><td align="center" valign="middle" >−0.12255887</td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >2100</td><td align="center" valign="middle" >−</td><td align="center" valign="middle" >0.03207783</td></tr><tr><td align="center" valign="middle" >5.89</td><td align="center" valign="middle" >3500</td><td align="center" valign="middle" >−0.00829298</td><td align="center" valign="middle" >−0.4732132</td></tr><tr><td align="center" valign="middle" >5.89</td><td align="center" valign="middle" >3550</td><td align="center" valign="middle" >0.014764781</td><td align="center" valign="middle" >−0.39880464</td></tr><tr><td align="center" valign="middle" >5.89</td><td align="center" valign="middle" >3800</td><td align="center" valign="middle" >−</td><td align="center" valign="middle" >−0.026761883</td></tr><tr><td align="center" valign="middle" >5.89</td><td align="center" valign="middle" >3850</td><td align="center" valign="middle" >−</td><td align="center" valign="middle" >0.0476466692</td></tr></tbody></table></table-wrap><fig id="fig2"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref></label><caption><title> Velocity vectors and temperature distribution in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x408.png" xlink:type="simple"/></inline-formula> for FGM with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x408.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x409.png" xlink:type="simple"/></inline-formula>, using <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x408.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x409.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x410.png" xlink:type="simple"/></inline-formula> modes. (a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x408.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x409.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x410.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x411.png" xlink:type="simple"/></inline-formula>. (b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x408.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x409.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x410.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x411.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x412.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x407.png"/></fig><fig id="fig3"  position="float"><label><xref ref-type="fig" rid="fig3">Figure 3</xref></label><caption><title> Velocity vectors and temperature distribution (with cross section) in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x414.png" xlink:type="simple"/></inline-formula> for FEM with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x414.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x415.png" xlink:type="simple"/></inline-formula>, using <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x414.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x415.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x416.png" xlink:type="simple"/></inline-formula> elements. (a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x414.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x415.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x416.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x417.png" xlink:type="simple"/></inline-formula>. Velocities. (b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x414.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x415.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x416.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x417.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x418.png" xlink:type="simple"/></inline-formula>. Temperature iso-surfaces and horizontal section</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x413.png"/></fig><p>bation was chosen as <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x419.png" xlink:type="simple"/></inline-formula> and interpolation in Rayligh number values using results from eigenvalue solver give <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x419.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x420.png" xlink:type="simple"/></inline-formula> for this problem. We can check these results with data from [<xref ref-type="bibr" rid="scirp.73197-ref4">4</xref>] where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x419.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x420.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x421.png" xlink:type="simple"/></inline-formula> is presented. One can see that the presented eigenvalue solver with numerical methods correctly represents first bifur- cation.</p><p>Another benchmark that we are running is a DNS data comparison with data, available at [<xref ref-type="bibr" rid="scirp.73197-ref19">19</xref>] and more information can be obtained at [<xref ref-type="bibr" rid="scirp.73197-ref20">20</xref>] . We are not using eigenvalue solver since the regimes for this DNS are in turbulent regime and it corre- sponds to multiple unstable eignevalues for non stationarity solution. For the DNS ben- chmark we are using the same setup as in [<xref ref-type="bibr" rid="scirp.73197-ref19">19</xref>] , namely <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula> with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula>. Random initial perturbation for temperature is used. For this benchmark we are using FGM with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x424.png" xlink:type="simple"/></inline-formula> modes and FEM with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x424.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x425.png" xlink:type="simple"/></inline-formula> elements. Since the flow is in deep turbulent regime, we are calculating statistical data:<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x424.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x426.png" xlink:type="simple"/></inline-formula>―mean spacially averaged values;<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x424.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x426.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x427.png" xlink:type="simple"/></inline-formula>―root mean square values;<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x424.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x426.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x427.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x428.png" xlink:type="simple"/></inline-formula>―total kinetic energy of turbulence and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x422.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x424.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x426.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x427.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x428.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x429.png" xlink:type="simple"/></inline-formula>―total dissipation of turbulent kinetic energy, that are defined as follows:</p><disp-formula id="scirp.73197-formula64"><graphic  xlink:href="http://html.scirp.org/file/16-2320322x430.png"  xlink:type="simple"/></disp-formula><p>here <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x431.png" xlink:type="simple"/></inline-formula> is an averaged Raynolds number taken analogous to [<xref ref-type="bibr" rid="scirp.73197-ref20">20</xref>] for the considered problems, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x431.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x432.png" xlink:type="simple"/></inline-formula>is a Reynolds averaged data, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x431.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x432.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x433.png" xlink:type="simple"/></inline-formula>is an fluctuation data, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x431.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x432.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x433.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x434.png" xlink:type="simple"/></inline-formula>is a period of averaging that is taken equal to [<xref ref-type="bibr" rid="scirp.73197-ref19">19</xref>] as 20 time planes, each <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x431.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x432.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x433.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x434.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x435.png" xlink:type="simple"/></inline-formula> ensembles for FEM method and analytical space integrals for FGM method.</p><p>Instantaneous snapshots of temperature distributions are shown in <xref ref-type="fig" rid="fig4">Figure 4</xref> and <xref ref-type="fig" rid="fig5">Figure 5</xref>. Note that for the latter distribution the boundary layer is thinner. Com- parison of statistical characteristics with available data from [<xref ref-type="bibr" rid="scirp.73197-ref19">19</xref>] is shown in <xref ref-type="fig" rid="fig6">Figure 6</xref>. It is clear that the statistical data is close to the provided simulation data. Please note, that the current results are obtained with higher order methods and, thus can be more exact. But in general the distribution is similar and so one can conclude that the proposed numerical methods for relatively hight Raylight numbers are correct. The leading direction of the flow is determained by the initial perturbations. In order to compare results with [<xref ref-type="bibr" rid="scirp.73197-ref19">19</xref>] we used <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x436.png" xlink:type="simple"/></inline-formula>-dominated perturbations.</p><fig id="fig4"  position="float"><label><xref ref-type="fig" rid="fig4">Figure 4</xref></label><caption><title> Instantaneous temperature distribution in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x438.png" xlink:type="simple"/></inline-formula> domain for air, results from FEM method. (a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x438.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x439.png" xlink:type="simple"/></inline-formula>. Temperature iso-surfaces. (b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x438.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x439.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x440.png" xlink:type="simple"/></inline-formula>. Temperature iso-surfaces with inclined plane cut</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x437.png"/></fig><fig id="fig5"  position="float"><label><xref ref-type="fig" rid="fig5">Figure 5</xref></label><caption><title> Instantaneous temperature distribution in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x442.png" xlink:type="simple"/></inline-formula> domain for air, results from FEM method. (a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x442.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x443.png" xlink:type="simple"/></inline-formula>. Temperature iso-surfaces. (b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x442.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x443.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x444.png" xlink:type="simple"/></inline-formula>. Temperature iso-surfaces with inclined plane cut</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x441.png"/></fig><fig id="fig6"  position="float"><label><xref ref-type="fig" rid="fig6">Figure 6</xref></label><caption><title> Comparison of statistical data for different<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x446.png" xlink:type="simple"/></inline-formula>. (a) RMS velocities,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x446.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x447.png" xlink:type="simple"/></inline-formula>. (b) Total kinetic energy and total dissipation of turbulent kinetic energy,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x446.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x447.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x448.png" xlink:type="simple"/></inline-formula>. (c) RMS velocities,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x446.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x447.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x448.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x449.png" xlink:type="simple"/></inline-formula>. (d) Total kinetic energy and total dissipation of turbulent kinetic energy,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x446.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x447.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x448.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x449.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x450.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x445.png"/></fig></sec><sec id="s6"><title>6. Bifurcations and Route to Chaos</title><p>Some bifurcations for the problem in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x451.png" xlink:type="simple"/></inline-formula> were presented in [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] as a survey of the results with the main emphasis on the Feigenbaum-Sharkovskiy sequence of cycles. In here we give new results for both setups.</p><sec id="s6_1"><title>6.1. Bifurcations in Domain with XY Periodicity</title><p>After the first bifurcation that is shown in Benchmarks section the flow stays steady that corresponds to the point in the phase space that remains in this point for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x452.png" xlink:type="simple"/></inline-formula> with gradual increase of velocity amplitude. At around <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x452.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x453.png" xlink:type="simple"/></inline-formula> for FGM and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x452.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x453.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x454.png" xlink:type="simple"/></inline-formula> for FEM, leading eigenvalue with multiplicity two crosses the imaginary axis. This results in another supercritical pitchfork bifurcation, forming solution that is symmetrical in another plane. Velocity vectors and temperature distribution are shown in <xref ref-type="fig" rid="fig7">Figure 7</xref>. We can see that the solution is now rotated <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x452.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x453.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x454.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x455.png" xlink:type="simple"/></inline-formula> with the formation of similar rolls.</p><fig id="fig7"  position="float"><label><xref ref-type="fig" rid="fig7">Figure 7</xref></label><caption><title> Velocity vectors and temperature distribution in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x457.png" xlink:type="simple"/></inline-formula> for FGM and leading eigenvalues of Jacobi matrix near Andronov-Hopf bifurcation at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x457.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x458.png" xlink:type="simple"/></inline-formula>. (a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x457.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x458.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x459.png" xlink:type="simple"/></inline-formula>. (b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x457.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x458.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x459.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x460.png" xlink:type="simple"/></inline-formula>. (c) Leading Jacobi matrix eigenvalues</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x456.png"/></fig><p>The Andronov-Hopf bifurcation occurs near <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x461.png" xlink:type="simple"/></inline-formula> for FGM method and around <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x461.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x462.png" xlink:type="simple"/></inline-formula> for FEM with the formation of limited cycle in the whole phase space. The following process for FGM is depicted in <xref ref-type="fig" rid="fig7">Figure 7</xref>. The limited cycle increases its amplitude and for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x461.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x462.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x463.png" xlink:type="simple"/></inline-formula> is shown in <xref ref-type="fig" rid="fig8">Figure 8</xref> alongside with the eigenvalues of Monodromy matrix. The corresponding velocity and temperature distributions are shown in <xref ref-type="fig" rid="fig9">Figure 9</xref> and trajectories in physical space with the magnitude of leading eigenvector are shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>0. It is clear that one eigenvalue is located at the unit cycle at the point <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x461.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x462.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x463.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x464.png" xlink:type="simple"/></inline-formula> that corresponds to the limited cycle. It is true for both numerical methods, although the convergence of IRA is faster for FGM method. Other eigenvalues are situated inside the unit circle and are stable. One can see the difference in eigenvalues for FEM and FGM methods, however both methods give correct leading eigenvalue. As one can see from the eigenvector, the flow is formed by the bending of the rolls with the subsequent oscillation. Although the attractor dimension is just one (limited cycle), the flow in physical space is already complicated. It can be traced with the stream lines obtained by Lagrangian particle tracers (<xref ref-type="fig" rid="fig1">Figure 1</xref>0) that are forming a complected path in the physical space.</p><p>At this point one may observe the effect of multistability. If perturbations of magnitude <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x465.png" xlink:type="simple"/></inline-formula> are applied to the system, the solution drifts to another attractor of dimension zero, i.e. stable point, temperature and velocity distributions are shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>1. It is clear that a formation of distorted square structures is presented. If we trance this solution back by decreasing <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x465.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x466.png" xlink:type="simple"/></inline-formula> we will get the square tile structures. For</p><fig id="fig8"  position="float"><label><xref ref-type="fig" rid="fig8">Figure 8</xref></label><caption><title> Cycle projection and ten leading eigenvalues of Monodromy matrix for different methods,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x468.png" xlink:type="simple"/></inline-formula>. (a) Projection of cycle to three dimensional phase subspace. (b) Eigenvalues of Monodromy matrix</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x467.png"/></fig><p>further reference we are not paying attention on multistable solutions near our main branch unless they form different scenario of transition to chaos.</p><p>With the further increase of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x469.png" xlink:type="simple"/></inline-formula> number we see the increase of amplitude of the limited cycle and with the sequential formation of the invariant two dimensional torus. It can be expected since complex-conjugate eigenvalues of the Monodromy matrix in <xref ref-type="fig" rid="fig1">Figure 1</xref>2 are closing to the unit circle on the complex plane. In order to obtain these results we had to run IRA with the same randomly initialised vector for all values of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x469.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x470.png" xlink:type="simple"/></inline-formula>. Secondary Hopf bifurcation occurs at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x469.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x470.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x471.png" xlink:type="simple"/></inline-formula> for FGM and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x469.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x470.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x471.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x472.png" xlink:type="simple"/></inline-formula> for FEM. This leads to the formation of the limited torus in the phase space, whose projection into three-dimensional subspace is shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>2 and physical space functions are shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>3. Please note that in many papers the bifurcation that leads to the formation of invariant torus is called Neimark-Sacker bifurcation. This is a</p><fig id="fig9"  position="float"><label><xref ref-type="fig" rid="fig9">Figure 9</xref></label><caption><title> Instantaneous velocity vectors and temperature dis- tribution in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x474.png" xlink:type="simple"/></inline-formula> for FGM. (a)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x474.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x475.png" xlink:type="simple"/></inline-formula>. (b)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x474.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x475.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x476.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x473.png"/></fig><fig id="fig10"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>0</label><caption><title> Lagrangian particle movement in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x478.png" xlink:type="simple"/></inline-formula> and magnitude of leading eigenvector that corresponds to maximum magnitude eigenvalue of Monodromy matrix, located at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x478.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x479.png" xlink:type="simple"/></inline-formula> on the complex plane for FGM. (a) Lagrangian particle movement. (b) Modulus of the leading eigenvector for velocities</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x477.png"/></fig><p>misuse of the term, since Neimark-Sacker bifurcation occurs in generic dynamical systems generated by iterated maps, see [<xref ref-type="bibr" rid="scirp.73197-ref21">21</xref>] , p. 113. Since we consider discrete system</p><fig id="fig11"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>1</label><caption><title> Multistable solution for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x481.png" xlink:type="simple"/></inline-formula> at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x481.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x482.png" xlink:type="simple"/></inline-formula> for FGM. (a) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x481.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x482.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x483.png" xlink:type="simple"/></inline-formula>temperature isosurfaces. (b) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x481.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x482.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x483.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x484.png" xlink:type="simple"/></inline-formula>velocity distribution</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x480.png"/></fig><fig-group id="fig12"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>2</label><caption><title> Leading eigenvalues of Monodromy matrix near second Hopf bifurcation as functions of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x487.png" xlink:type="simple"/></inline-formula> and 2D invariant torus in phase subspace. (a) Evolution of Monodromy matrix leading eigenvalues. (b) Projection of invariant 2D torus into three-dimensional phase subspace.</title></caption><fig id ="fig12_1"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x485.png"/></fig><fig id ="fig12_2"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x486.png"/></fig></fig-group><fig id="fig13"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>3</label><caption><title> Temperature and velocity distributions in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x489.png" xlink:type="simple"/></inline-formula> for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x489.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x490.png" xlink:type="simple"/></inline-formula> that coresponds to the invariant torus in the phase space. (a) Velocity vectors. (b) Temperature isosurfaces</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x488.png"/></fig><p>that approximates continuous one and use high order methods we assume that the behavior of our discrete system is close to the continuous one at least as long as the estimate (53) holds. So we use the term secondary Hopf bifurcations for such bifurcations that have simple complex conjugate eigenvalue with zero real part at the critical point in parameter space and lead to the increase of the attractor dimension by one.</p><p>With the increase of the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula> we can observe the formation of the 2D invariant torus with period two that can be traced through the analysis of Poincare sections only. The period doubling bifurcation takes place at around <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula> (for both FGM and FEM) on the second frequency (the corresponding eigenvalue crosses unit circle at point<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula>). Results of the phase space projection and Poincare section are shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>4. With the further increase of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula> a resonant torus is formed it can be observed on the same figure in the Poincare section for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x495.png" xlink:type="simple"/></inline-formula> using FGM. Such exact value was chosen in order to perform eigenvalue analysis (was found using quasi-Newton method). The period during integration <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x495.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x496.png" xlink:type="simple"/></inline-formula> in (48) was defined by the return map in the Poincare section. Please note that the calculation of these eigenvalues took about a month on a 5GPU cluster. Corresponding eigenvalues are presented in <xref ref-type="fig" rid="fig1">Figure 1</xref>5. Two pure real eigenvalues have magnitude close to unity (0.999 and 0.997 and we assume that these eigenvalues are of magnitude one) and are located at the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x495.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x496.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x497.png" xlink:type="simple"/></inline-formula> point on the unit circle. This is another way of saying that the system has two zero Lyapunov exponents and all other exponents are negative (inside the unit circle on the complex plane). This corresponds to the phase-lock of three frequencies: two are connected through period doubling and another was irrational to them both. It is interesting that there are two more eigenvalues are closing the point <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x495.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x496.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x497.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x498.png" xlink:type="simple"/></inline-formula> that can mean a possibility of period doubling bifurcation. However with the increase of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x495.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x496.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x497.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x498.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x499.png" xlink:type="simple"/></inline-formula>, after the phase-lock, the system continuous to maintain the same attractor (2D two period torus with increasing magnitude) and suffers anther phase-lock (with another frequency of the period doubling) at about <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x491.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x492.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x495.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x496.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x497.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x498.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x499.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x500.png" xlink:type="simple"/></inline-formula> (see <xref ref-type="fig" rid="fig1">Figure 1</xref>5). Again, two pure real eigenvalues are of unit magnitude (1.019 and 0.998) correspond to zero Lyapunov exponents. However there are more eigenvalues closing to the unit circle in</p><fig id="fig14"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>4</label><caption><title> Invariant 2D torus period 2 and Poincare section for it with close resonant torus. (a) Projection to the three dimensional phase subset,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x502.png" xlink:type="simple"/></inline-formula>. (b) Poincare section using plane<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x502.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x503.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x502.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x503.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x504.png" xlink:type="simple"/></inline-formula>and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x502.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x503.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x504.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x505.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x501.png"/></fig><p>this case.</p><p>From this point the solution branches dramatically. The first branch is presented by the solutions with no perturbation introduced. In this case the solution undergoes the formation of hyperbolic attractor on one of the torus cycles starting from<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x506.png" xlink:type="simple"/></inline-formula>. Please note that we present data only from FGM here since FEM was not used for this branch. Evolution of return maps is shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>6. One can see that the onset of chaos emerges very fast in parameter space through local hyperbolicity. With this the attractor dimension remains bounded between 2 and 3. This can be stated since the</p><fig id="fig15"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>5</label><caption><title> Leading eigenvalues for resonant 2D torus period two in two cases of phase locking. (a) Leading eigenvalues of the resonant torus,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x508.png" xlink:type="simple"/></inline-formula>. (b) Leading eigenvalues of the resonant torus,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x508.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x509.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x507.png"/></fig><p>second Poincare section (Poincare slice) is void. In order to justify the fact of local hyperbolicity let us consider a zoom-in of Poincare section for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x510.png" xlink:type="simple"/></inline-formula> and construct series of Lameray diagram. In <xref ref-type="fig" rid="fig1">Figure 1</xref>7 we show a part of Poincare section (we selected the one that is closer to the straight line located at</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x511.png" xlink:type="simple"/></inline-formula>in <xref ref-type="fig" rid="fig1">Figure 1</xref>6) that was rotated in such way that the image of the mapping is of minimal width. Then for this data we construct</p><fig id="fig16"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>6</label><caption><title> Transition to chaos through hyperbolic attractor on a 2D invariant torus period two. (a) Poincare sections for different <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x513.png" xlink:type="simple"/></inline-formula> (resonance), <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x513.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x514.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x513.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x515.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x513.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x515.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x516.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x513.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x515.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x516.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x517.png" xlink:type="simple"/></inline-formula>(chaos). (b) Projection into three planes of a 3D Poincare section for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x513.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x515.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x516.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x517.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x518.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x512.png"/></fig><p>Lameray diagram by considering mapping<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x519.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x519.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x520.png" xlink:type="simple"/></inline-formula> is <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x519.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x520.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x521.png" xlink:type="simple"/></inline-formula> data in selected Poincare section part. One can see that the iteration map has neither cyclic behavior (as can be exacted in case of finite number of period doubling bifurcations) nor convergence. If we take more data the points on middle figure (<xref ref-type="fig" rid="fig1">Figure 1</xref>6) will</p><fig id="fig17"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>7</label><caption><title> Analysis of Poincare section fragment for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x523.png" xlink:type="simple"/></inline-formula>. (a) Rotation of Poincare section fragment. (b) Lameray diagram for mapping<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x523.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x524.png" xlink:type="simple"/></inline-formula>. (c) Action of Lameray mapping</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x522.png"/></fig><p>form a fractal set with infinitely many close inclusions. Examples of such maps for ODEs are constructed in [<xref ref-type="bibr" rid="scirp.73197-ref22">22</xref>] . However we may assume another scenario of fast and multiple period doubling bifurcations with the formation of singular Feigenbaum attractor in the Poincare section. This can be implied through the analysis of some leading eigenvalues that are located closer to the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x525.png" xlink:type="simple"/></inline-formula> point for resonance case, see <xref ref-type="fig" rid="fig1">Figure 1</xref>5. But for this case (close to the resonance) the IRA algorithm filed to converge so we cannot justify this scenario. We are unable to reveal any localized structures for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x525.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x526.png" xlink:type="simple"/></inline-formula> in the phase space for this branch.</p><p>Another branch is observed if small perturbations (of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x527.png" xlink:type="simple"/></inline-formula> magnitude) were introduced at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x527.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x528.png" xlink:type="simple"/></inline-formula>. In this case the system turns itself to another torus solution that further undergoes secondary Hopf bifurcation with the formation of a 3D invariant torus at around <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x527.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x528.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x529.png" xlink:type="simple"/></inline-formula> for FGM and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x527.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x528.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x529.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x530.png" xlink:type="simple"/></inline-formula> for FEM. First and second Poincare sections are shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>8 that were obtained using FGM.</p><p>This 3D invariant torus remains stable for the whole calculation time (up to 60 mln time steps) and for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x531.png" xlink:type="simple"/></inline-formula> (8654 for FEM) we can observe a possible formation of a 4D invariant torus, see dynamics of its formation in <xref ref-type="fig" rid="fig1">Figure 1</xref>9 for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x531.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x532.png" xlink:type="simple"/></inline-formula>,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x531.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x532.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x533.png" xlink:type="simple"/></inline-formula>. Please note that these results were obtained on FGM with increased spacial resolution up to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x531.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x532.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x533.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x534.png" xlink:type="simple"/></inline-formula>. One can see on the spectra of the signal (<xref ref-type="fig" rid="fig1">Figure 1</xref>8) that there are more frequencies in the low wavenumber region for 4D torus regime. This possibly can be explained by the reverse energy cascade pumping from high wavenumbers due to the decrease of diffusion. The solution becomes chaotic for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x531.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x532.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x533.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x534.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x535.png" xlink:type="simple"/></inline-formula>. Thus an initial stage of Landau-Hopf scenario is found in this branch with the formation of attractor dimension at least four.</p><p>Another branch can be found by the application of the symmetric initial conditions for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x536.png" xlink:type="simple"/></inline-formula>. We are using <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x536.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x537.png" xlink:type="simple"/></inline-formula> and first bifurcation takes place at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x536.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x537.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x538.png" xlink:type="simple"/></inline-formula>. In this case the flow is formed by roll structures (<xref ref-type="fig" rid="fig2">Figure 2</xref>0) through the first supercritical pitchfork bifurcation that remain in the same direction without the second pitchfork bifurcation. This branch can be traced only by FGM because FEM drops to one of the “tori” solutions with distorted roll structures that were discussed above. A a consequence a solution tends to preserve symmetry and this branch is developing through bifurcations of limited cycles. The amplitude of velocity grows with the increase of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x536.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x537.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x538.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x539.png" xlink:type="simple"/></inline-formula> and at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x536.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x537.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x538.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x539.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x540.png" xlink:type="simple"/></inline-formula> the solution has an Andronov-Hopf bifurcation that leads to the formation of the limited cycle.</p><p>Eigenvalues of the Jacobi matrix, Monodromy matrix and cycle projection into phase subspace are shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>1. Monodromy matrix has one real eigenvalue at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x541.png" xlink:type="simple"/></inline-formula> on the complex plane that corresponds to one zero Lyapunov exponent, thus forming a limited cycle in the solution space since all other eigenvalues are inside a unit circle. One can see that two more eigenvalues are approaching <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x541.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x542.png" xlink:type="simple"/></inline-formula> point that indicates period doubling bifurcation. It takes palace at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x541.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x542.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x543.png" xlink:type="simple"/></inline-formula> with the formation of limited cycle period two. The full bifurcation diagram is presented in <xref ref-type="fig" rid="fig2">Figure 2</xref>2, the idea of its construction is taken from [<xref ref-type="bibr" rid="scirp.73197-ref6">6</xref>] . We will not stop on detail analysis of every solution and only point out that further increase of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x541.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x542.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x543.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x544.png" xlink:type="simple"/></inline-formula> leads to the</p><fig id="fig18"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>8</label><caption><title> Transition to chaos through the Landau-Hopf scenario. (a) Phase subspace and Poincare sections for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x546.png" xlink:type="simple"/></inline-formula>. (b) Poincare section for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x546.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x547.png" xlink:type="simple"/></inline-formula>. (c) Time series spectra for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x546.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x547.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x548.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x545.png"/></fig><p>development of full Feigenbaum-Sharkovsky inverse and direct cascades. However, due to multistability we observe formations of cascade threads. For example, at around</p><fig id="fig19"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>9</label><caption><title> Transition to chaos through the Landau-Hopf scenario-formation of 4D torus. (a) Second Poincare sections for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x550.png" xlink:type="simple"/></inline-formula> that corresponds to stable 3D invariant torus. (b) Second Poincare section for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x551.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x552.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x549.png"/></fig><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x553.png" xlink:type="simple"/></inline-formula>we have another multistable solution that has cycle period two. Another multistable solutions are observed at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x554.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x554.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x555.png" xlink:type="simple"/></inline-formula> that are presented by cycles. At some points the solution has an effect of intermittency (for example at</p><fig id="fig20"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>0</label><caption><title> Roll structures for symmetric branch, stationary solution. (a) Velocity for symmetric branch,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x557.png" xlink:type="simple"/></inline-formula>. (b) Temperature for symmetric branch,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x557.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x558.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x556.png"/></fig><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x559.png" xlink:type="simple"/></inline-formula>and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x559.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x560.png" xlink:type="simple"/></inline-formula>). Example of such intermittency is presented in <xref ref-type="fig" rid="fig2">Figure 2</xref>3 along with cycle period three from Sharkovsky cascade and its Monodromy matrix eigenvalues. Finally the system emerges into chaos through singular attractor and from <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x559.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x560.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x561.png" xlink:type="simple"/></inline-formula> we are unable to detect any regular structures in the phase space.</p></sec><sec id="s6_2"><title>6.2. Bifurcations in Bounded Cubic Domain</title><p>We are only discussing results here that were not mentioned in [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] . This subsection is focused on eigenvalues since we were unable to perform eigenvalue analysis in our previous papers due to computational limitations. All results are obtained with FEM.</p><p>There were three series of experiments conducted in [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] for various <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x562.png" xlink:type="simple"/></inline-formula> numbers. Each series resulted in different scenarios of transition to chaos. As a matter of fact, this was not only due to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x562.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x563.png" xlink:type="simple"/></inline-formula> change, but also due to the symmetries in the system. At first, all scenarios have a common initial stage-supercritical pitchfork bifurcation. The first one was found in Section 5. The Rayleigh number of all bifurcations is higher compared to periodic domain due to the wall stabilization effect. If the initial perturbations are given as discussed in Benchmark Section 5 (dominated along one of the axis), then the flow develops a symmetrical solution in one plane, see <xref ref-type="fig" rid="fig2">Figure 2</xref>4.</p><p>Another set of initial conditions may lead to other symmetries. For example, corner structures are formed if an initial condition are taken with constant perturbation of magnitude <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x564.png" xlink:type="simple"/></inline-formula> in the form:</p><disp-formula id="scirp.73197-formula65"><label>(55)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/16-2320322x565.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x566.png" xlink:type="simple"/></inline-formula> is taken to have equal area. Results for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x566.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x567.png" xlink:type="simple"/></inline-formula> are presented in</p><p><xref ref-type="fig" rid="fig2">Figure 2</xref>5. These solutions are symmetric relative to planes:<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x568.png" xlink:type="simple"/></inline-formula>.</p><p>The direction of symmetry is selected only by initial conditions. Further increase of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x569.png" xlink:type="simple"/></inline-formula> number leads to the increase of amplitude of velocities. Finally, the solution can either go through supercritical pitchfork bifurcation or through Andronov-Hopf bifur-</p><fig-group id="fig21"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>1</label><caption><title> Jacobi and Monodromy matrix eigenvalues and projection of the limited cycle. (a) Leading eigenvalues of Jacobi matrix for different<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x572.png" xlink:type="simple"/></inline-formula>. (b) Limited cycle projection into phase subspace,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x572.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x573.png" xlink:type="simple"/></inline-formula>. (c) Leading eigenvalues of Monodromy matrix,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x572.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x573.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x574.png" xlink:type="simple"/></inline-formula>.</title></caption><fig id ="fig21_1"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x570.png"/></fig><fig id ="fig21_2"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x571.png"/></fig></fig-group><fig id="fig22"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>2</label><caption><title> Bifurcation Diagram for symmetric branch. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x576.png" xlink:type="simple"/></inline-formula>is a projection of middle plane section to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x576.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x577.png" xlink:type="simple"/></inline-formula>-axis. Two points indicate a cycle, four-cycle period 2, discrete set of points-singular Feigenbaum or Sharkovsky cycle, line-chaos</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x575.png"/></fig><p>cation without the pitchfork (for example see <xref ref-type="fig" rid="fig2">Figure 2</xref>6). Solutions are asymmetric in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x578.png" xlink:type="simple"/></inline-formula> in the first case and this leads to the multiple invariant tori bifurcations, see [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] . In the second case the solutions are symmetric relative to a plane (e.g. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x578.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x579.png" xlink:type="simple"/></inline-formula>in <xref ref-type="fig" rid="fig2">Figure 2</xref>4) and this leads to bifurcations of limited cycles with the formation of singular attractors. It was noticed in [<xref ref-type="bibr" rid="scirp.73197-ref8">8</xref>] that the solution may become asymmetric while on a cycle cascade which leads to chaotic solution through subcritical pitchfork bifurcation. It can be seen by the analysis of the Monodromy matrix eigenvalues in <xref ref-type="fig" rid="fig2">Figure 2</xref>6. Eigenvalues closer to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x578.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x579.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x580.png" xlink:type="simple"/></inline-formula> point are responsible for possible future period doubling bifurcations, but an eigenvalue closer to the leading one at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x578.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x579.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x580.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x581.png" xlink:type="simple"/></inline-formula> can be responsible for secondary pitchfork bifurcation.</p><p>We present an example of a symmetric singular attractor in <xref ref-type="fig" rid="fig2">Figure 2</xref>7 for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula>. Note that Poincare section of the attractor is perfectly symmetrical in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x583.png" xlink:type="simple"/></inline-formula> plane, but asymmetric in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x583.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x584.png" xlink:type="simple"/></inline-formula> plane (in this particular case the section is symmetric relative to a central point). Another example is the formation of a singular attractor from Sharkovsky cascade cycle of period 3 that is shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>8. We are able to analyze eigenvalues of Monodromy matrix for the cycle period 3 (C3) for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x583.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x584.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x585.png" xlink:type="simple"/></inline-formula> and for a small deviation from the parameter value. One can see that for C3 all eigenvalues are inside the unit circle except for one at <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x583.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x584.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x585.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x586.png" xlink:type="simple"/></inline-formula> point. With the increase of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x583.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x584.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x585.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x586.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x587.png" xlink:type="simple"/></inline-formula> we can observe that seven leading eigenvalues out of ten are escaping the unit circle through the point<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x582.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x583.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x584.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x585.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x586.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x587.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x588.png" xlink:type="simple"/></inline-formula>. Please note that these seven eigenvalues are scaled down to fit on graph. Maximum magnitude of the first eigenvalue is 23. This justifies the fact that the singular cycle (shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>8) is developing through series of period doubling bifurcations. After these singular cycles we are unable to detect any structures in the phase space.</p></sec></sec><sec id="s7"><title>7. Discussion</title><p>There are more questions to discuss that are not touched here. The problem of inter-</p><fig id="fig23"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>3</label><caption><title> Intermittency and Sharkovsky cycle period three. (a) Inter- mittency at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x590.png" xlink:type="simple"/></inline-formula>. (b) Projection of limited cycle period three,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x590.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x591.png" xlink:type="simple"/></inline-formula>. (c) Monodromy matrix eigenvalues for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x590.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x591.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x592.png" xlink:type="simple"/></inline-formula></title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x589.png"/></fig><fig id="fig24"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>4</label><caption><title> Symmetrical solutions in plane <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x594.png" xlink:type="simple"/></inline-formula> for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x594.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x595.png" xlink:type="simple"/></inline-formula>. (a) Temperature dis- tribution. (b) Sections of temperature distribution. (c) Sections of velocity magnitude dis- tribution</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x593.png"/></fig><fig id="fig25"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>5</label><caption><title> Symmetry solutions for modified velocity initial conditions at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x597.png" xlink:type="simple"/></inline-formula>. (a) Temperature distribution. (b) Sections of temperature distribution. (c) Sections of velocity magnitude distribution</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x596.png"/></fig><fig id="fig26"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>6</label><caption><title> Eigenvalues of Jacobi matrix for pitchfork and Hopf bifurcations and Monodromy matrix for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x599.png" xlink:type="simple"/></inline-formula>. (a) Hopf bifurcation at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x599.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x600.png" xlink:type="simple"/></inline-formula>. (b) Pitchfork bifurcation at<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x599.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x600.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x601.png" xlink:type="simple"/></inline-formula>. (c) Monodromy matrix eigenvalues</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x598.png"/></fig><fig id="fig27"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>7</label><caption><title> Singular attractor phase subspace projection and Poincare sections for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x603.png" xlink:type="simple"/></inline-formula>. (a) Cycle projection into 2D phase subspace. (b) Poincare section using velocity. (c) Poincare section using velocity and curl</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x602.png"/></fig><fig id="fig28"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref>8</label><caption><title> Cycle period 3 and singular attractor phase subspace projections, Poincare section of the singular attractor and eigenvalues of Monodromy matrix. (a) Cycle period 3 projection into 2D phase subspace for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x605.png" xlink:type="simple"/></inline-formula>. (b) Singular attractor projection into 2D phase subspace for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x605.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x606.png" xlink:type="simple"/></inline-formula>. (c) Poincare section of the singular attractor. (d) Evolution of Monodromy matrix eigenvalues</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/16-2320322x604.png"/></fig><p>mittency was only confirmed but not discussed in detail. It is a future work to confirm the ideas about the cubic mapping<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x607.png" xlink:type="simple"/></inline-formula>, to describe intermittency, as suggested in [<xref ref-type="bibr" rid="scirp.73197-ref7">7</xref>] . The dependence on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x607.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x608.png" xlink:type="simple"/></inline-formula> was not investigated, how- ever it is known, see [<xref ref-type="bibr" rid="scirp.73197-ref7">7</xref>] , that the route to turbulence depends on it and intermittency emerges more for high <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x607.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x608.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x609.png" xlink:type="simple"/></inline-formula> (spacial instabilities are more elaborated in this case). The emergence of a 4D torus in Landau-Hopf scenario is still a question. It can be confirmed by the author’s new idea (to be published soon) of constructing an <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x607.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x608.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x609.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x610.png" xlink:type="simple"/></inline-formula>-net of splines over the attractor and tracking its evolution on the attractor. If the structure in question is a torus and its mapping in phase space is diffeomorphic, then the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x607.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x608.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x609.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x610.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x611.png" xlink:type="simple"/></inline-formula>-net will converge. But it requires enormous amount of computational power and time. Another question is the automatization of the process of bifurcation detection and eigenvalue analysis as it was suggested in [<xref ref-type="bibr" rid="scirp.73197-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.73197-ref23">23</xref>] . Another question is the emergence of traveling waves for periodic problem and explicit study of it’s influence on bifurcation scenarios. All these questions are topics for further research.</p></sec><sec id="s8"><title>8. Conclusions</title><p>In this paper, we present results for laminar-turbulent transition in Rayleigh-Benard convection from the nonlinear dynamics point of view. In order to analyze simple bifurcations, we use Implicitly Restarted Arnoldi eigenvalue solver implemented on top of Navier-Stokes solvers. All methods are extended to MultiGPU architecture for acceleration.</p><p>We show that there are many routes to turbulence in 3D Rayleigh-Benard convection problem. If the flow is bounded only from one direction, then the onset of turbulence emerges for small <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x612.png" xlink:type="simple"/></inline-formula> numbers. For all bounded domain, the typical values of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x612.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x613.png" xlink:type="simple"/></inline-formula> number are 30 - 50 times higher. In all cases, the initial stage is analogous to 2D Rayleigh-Benard convection with the emergence of pitchfork bifurcation followed by Andronov-Hopf bifurcation, see [<xref ref-type="bibr" rid="scirp.73197-ref6">6</xref>] . However, the scenario is different from here on. There is more symmetry in 3D problem and symmetry groups may become generators for Hopf bifurcations. It was studied in [<xref ref-type="bibr" rid="scirp.73197-ref24">24</xref>] on an ABC flow. If the symmetry is preserved exactly (that can only be achieved numerically by the application of high order methods of quasi-spectral accuracy and detailed discretization), then the system undergoes bifurcations of limited cycles. In this case, we confirm the existence of multiple Figenbaum-Sharkovsky sequences of cycle periods with direct and inverse directions, see bifurcation diagram in <xref ref-type="fig" rid="fig2">Figure 2</xref>2. We also observed multistability and existence of intermittency. Multistability can be explained by the neutral curve in <xref ref-type="fig" rid="fig1">Figure 1</xref>, since for high Rayleigh numbers there are many possible attracting sets. Intermittent solutions are only confirmed for limited cycles. If the symmetry is broken, then an invariant torus emerges through the secondary Hopf bifurcation. It was confirmed by the analysis of Monodromy matrix eigenvalues with the emergence of complex conjugate eigenvalue with magnitude greater than unity. At this point, the solution may vary and be continuous either through Landau-Hopf scenario of a N-d tori cascade or through the formation of resonant torus with further phase-locking and possible local hyperbolicity. We also show how the mapping to itself of the Poincare section in the singular torus works using Lameray diagram. All these “tori” routes lead to chaos much faster than that is for cycle route. It was noted in [<xref ref-type="bibr" rid="scirp.73197-ref6">6</xref>] , that there are chaotic attractors and stationary points coexisting for 2D case after the development of chaotic solution for high <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x612.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x613.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/16-2320322x614.png" xlink:type="simple"/></inline-formula> numbers. We are unable to confirm this yet for the considered 3D cases. However, it seems likely in 3D as well, due to multistability. But in 3D case, the basis of attraction of these point attractors is smaller and, hence, it is more difficult to find this kind of system behavior.</p></sec><sec id="s9"><title>Acknowledgements</title><p>The work is supported by the Russian Found of Fundamental Research (grant RFFR 14-07-00123) and by the grant ONIT RAS 4. The author wishes to thank Dr. Ryabkov O. I., Prof. Magnitskii N. A., Prof. Sidorov S. V. and Prof. Biturin V. A. for fruitful discussions and support of his research.</p></sec><sec id="s10"><title>Cite this paper</title><p>Evstigneev, N.M. (2016) Laminar-Turbulent Bifurcation Scenario in 3D Rayleigh-Benard Convection Problem. Open Journal of Fluid Dynamics, 6, 496- 539. http://dx.doi.org/10.4236/ojfd.2016.64035</p></sec></body><back><ref-list><title>References</title><ref id="scirp.73197-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Tucker, W. (2002) A Rigorous ODE Solver and Smale’s 14th Problem. 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