<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OALibJ</journal-id><journal-title-group><journal-title>Open Access Library Journal</journal-title></journal-title-group><issn pub-type="epub">2333-9705</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/oalib.1107739</article-id><article-id pub-id-type="publisher-id">OALibJ-111404</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject><subject> Business&amp;Economics</subject><subject> Chemistry&amp;Materials Science</subject><subject> Computer Science&amp;Communications</subject><subject> Earth&amp;Environmental Sciences</subject><subject> Engineering</subject><subject> Medicine&amp;Healthcare</subject><subject> Physics&amp;Mathematics</subject><subject> Social Sciences&amp;Humanities</subject></subj-group></article-categories><title-group><article-title>
 
 
  Prediction of the Active Ingredients and Mechanism of ASH against Liver Cancer Based on Network Pharmacology and Molecular Docking
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Wenhua</surname><given-names>Guo</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Kun</surname><given-names>Zhang</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Luhong</surname><given-names>Yang</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib></contrib-group><aff id="aff2"><addr-line>Modern College of Humanities and Science of Shanxi Normal University, Linfen, China</addr-line></aff><aff id="aff1"><addr-line>School of Life Science, Shanxi Normal University, Linfen, China</addr-line></aff><pub-date pub-type="epub"><day>28</day><month>07</month><year>2021</year></pub-date><volume>08</volume><issue>08</issue><fpage>1</fpage><lpage>14</lpage><history><date date-type="received"><day>8,</day>	<month>July</month>	<year>2021</year></date><date date-type="rev-recd"><day>17,</day>	<month>August</month>	<year>2021</year>	</date><date date-type="accepted"><day>20,</day>	<month>August</month>	<year>2021</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  The network pharmacology and molecular docking technology were used to elucidate the mechanism of Artemisiae scopariae Herba (ASH) against liver cancer (LC). TCMSP and UniProt database were used to collect the active ingredients of ASH and predict their potential targets. The targets of LC were screened by GeneCards, OMIM and TTD database. The intersections of drug and disease targets were obtained by online software Venny 2.1, and the intersection targets were imported into R software (v3.6.3) for GO and KEGG function enrichment analysis. Construction of protein-protein interaction (PPI) network through STRING database, Cytoscape software was used to screen hub genes. Molecular docking analysis of hub genes was carried out with AutoDock vina software. A total of 13 active ingredients were screened out from ASH and 103 drug and disease intersection targets were screened. Finally, 7 hub targets including AKT1, TP53, JUN, MAPK1, TNF, RELA, IL6 were screened out. The hub targets were docked well with some active ingredients. The active ingredients of ASH are involved in hepatitis B, hepatitis C and other signaling pathways by acting on AKT1, TP53, JUN and other targets, which may play a role in the treatment of LC.
 
</p></abstract><kwd-group><kwd>Artemisiae scopariae Herba (ASH)</kwd><kwd> Liver Cancer</kwd><kwd> Network Pharmacology</kwd><kwd> Molecular Docking</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Artemisiae scopariae Herba (ASH) also called Artemisia capillaris (AC), belongs to the family of Asteraceae and the genus Artemisia [<xref ref-type="bibr" rid="scirp.111404-ref1">1</xref>] . As a therapeutic traditional medicine, it showed the anti-inflammatory effects in chronic hepatitis B virus infection and liver cirrhosis [<xref ref-type="bibr" rid="scirp.111404-ref2">2</xref>] . Moreover, the major constituents of ASH such as capillin and scoparone exhibit anti-cancer effects in liver, prostate, and lung cancers [<xref ref-type="bibr" rid="scirp.111404-ref2">2</xref>] . The extract of ASH (AC68) not only induced apoptosis but also inhibited cell growth, migration, and invasion of liver cancer cells by blocking the PI3K/AKT pathway [<xref ref-type="bibr" rid="scirp.111404-ref3">3</xref>] . ASH has certain effects on the treatment of hepatitis, also inhibits cell growth, invasion, and metastasis in liver cancer, together with induction of apoptosis, as well as hepatoprotective property [<xref ref-type="bibr" rid="scirp.111404-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref4">4</xref>] .</p><p>Liver cancer (LC) is the second most common cause of cancer-related death worldwide, it ranks fifth in terms of global cases and second in terms of deaths for males, hepatocellular carcinoma (HCC) is the most common type of LC worldwide [<xref ref-type="bibr" rid="scirp.111404-ref5">5</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref6">6</xref>] . Lack of suitable biomarkers for early detection and limited treatment strategies are the major causes of high mortality [<xref ref-type="bibr" rid="scirp.111404-ref7">7</xref>] . A variety of risk factors have been associated with the development of LC, including hepatitis viruses, cirrhosis obesity and fatty liver disease [<xref ref-type="bibr" rid="scirp.111404-ref8">8</xref>] . The tumor microenvironment (TME) plays an important role in tumor progression and metastasis which contributes to tumor cell proliferation, survival, migration, and invasion [<xref ref-type="bibr" rid="scirp.111404-ref9">9</xref>] . More and more studies have revealed that TME has critical roles in the progression of LC [<xref ref-type="bibr" rid="scirp.111404-ref10">10</xref>] .</p><p>There are several treatment options for LC including chemotherapy, surgery, radiation and immunotherapy [<xref ref-type="bibr" rid="scirp.111404-ref11">11</xref>] . Unfortunately, each of the treatment options suffers some drawbacks. Chinese medicines (CMs) have potential to both prevent LC occurrence and retard LC progression. The actions of CMs on LC may include tumor growth inhibition, antimetastatic activities, anti-inflammation, anti-LC stem cells, reversal on multi-drug resistance and induction/reduction of oxidative stress [<xref ref-type="bibr" rid="scirp.111404-ref12">12</xref>] . As a traditional Chinese medicine, ASH shows hepatoprotective property, and there is no effective therapy available to treat LC at present, which is expected to have a certain effect in the treatment of LC.</p></sec><sec id="s2"><title>2. Methods</title><sec id="s2_1"><title>2.1. The Putative Targets of ASH</title><p>“Artemisiae scopariae Herba” was used as a keyword in the traditional Chinese medicine system pharmacology database and analysis platform (TCMSP, http://tcmspw.com/tcmsp.php) to get the ingredients of ASH and the parameters for the selection of active ingredients were set as follows: oral bioavailability (OB) ≥ 30% and drug-likeness (DL) ≥ 0.18 [<xref ref-type="bibr" rid="scirp.111404-ref13">13</xref>] . In addition, potential targets of active ingredients were obtained from the TCMSP database, then the target proteins were imported into the UniProt database (https://www.uniprot.org/) to obtain the gene names.</p></sec><sec id="s2_2"><title>2.2. Related Targets of LC and Prediction of Potential Targets of ASH against LC</title><p>Liver cancer related genes were retrieved from Genecards (https://www.genecards.org/), OMIM (https://omim.org/) and TTD (http://db.idrblab.net/ttd/) database. The search results from each database were combined and duplicates were removed.</p><p>Online software Venny 2.1 (https://bioinfogp.cnb.csic.es/tools/venny/index.html) was used to obtain the common targets between ASH and LC. The “drug-ingredient-disease-target” network of ASH anti-LC was constructed by using Cytoscape software (v3.7.2).</p></sec><sec id="s2_3"><title>2.3. Functional Enrichment Analysis</title><p>The common targets were used for GO and KEGG pathway enrichment with the Cluster Profiler package in R software (v3.6.3), and the “ggplot2” package was used to visualize the GO and KEGG enrichment results [<xref ref-type="bibr" rid="scirp.111404-ref14">14</xref>] .</p></sec><sec id="s2_4"><title>2.4. Protein-Protein Interaction (PPI) Network Construction and Hub Genes Screening</title><p>The PPI network was retrieved from STRING Version 11.0 (https://string-db.org/) by selecting Homo sapiens as the organism, and a confidence score &gt; 0.9 (highest confidence) was set as significant [<xref ref-type="bibr" rid="scirp.111404-ref15">15</xref>] . PPI network was then visualized by Cytoscape software (v3.7.2), CytoNCA plugin of Cytoscape was used to screen hub genes based on three criteria: degree centrality (DC), betweenness centrality (BC) and closeness centrality (CC) [<xref ref-type="bibr" rid="scirp.111404-ref16">16</xref>] .</p></sec><sec id="s2_5"><title>2.5. Molecular Docking Simulation</title><p>The molecular docking was performed to further investigate interactions between hub targets and their correspondent active ingredients. The structures of hub target proteins were obtained from the PDB database (https://www.rcsb.org/) and processed with PyMOL software. The 2D structure of the active ingredients was downloaded from PubChem (https://pubchem.ncbi.nlm.nih.gov) and energy minimised using MM2 in Chem3D. Afterwards, both the ligand and the receptor were converted to the PDBQT format using AutoDock Tools (ADT 1.5.6), and the docking is performed by running Vina. If the binding energy is less than −5 kJ∙mol<sup>−</sup><sup>1</sup>, it indicated that the target has certain binding activity with the ingredient, the lower the binding energy value, the stronger the binding to the target protein [<xref ref-type="bibr" rid="scirp.111404-ref17">17</xref>] .</p></sec></sec><sec id="s3"><title>3. Results</title><sec id="s3_1"><title>3.1. Active Compounds and Targets of ASH</title><p>A total of 13 active ingredients of ASH were screened from TCMSP database, the correspondent target proteins of each active ingredient were also obtained (<xref ref-type="table" rid="table1">Table 1</xref>). After removing duplicated targets, we obtained 169 standard gene names (based on UniProt annotation).</p></sec><sec id="s3_2"><title>3.2. Gene Targets of LC and Potential Targets of ASH against LC</title><p>A total of 1004 targets for LC were collected from the GeneCards database by setting relevance score &gt; 20, we identify 493 and 13 LC-related targets from the OMIM and TTD databases. After merging and deleting the duplicate genes, we collected 1410 LC-related target genes.</p><p>Venn diagram was generated through the online tool Venny 2.1 and acquired 103 genes about ASH against LC (<xref ref-type="fig" rid="fig1">Figure 1</xref>). To further discover the mechanism of ASH against LC, the PPI network of targets for ASH anti-LC was shown as <xref ref-type="fig" rid="fig2">Figure 2</xref>.</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Active ingredients in Artemisiae scopariae Herba (ASH)</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Mol ID</th><th align="center" valign="middle" >Molecule Name</th><th align="center" valign="middle" >OB (%)</th><th align="center" valign="middle" >DL</th></tr></thead><tr><td align="center" valign="middle" >MOL008045</td><td align="center" valign="middle" >4’-Methylcapillarisin</td><td align="center" valign="middle" >72.18</td><td align="center" valign="middle" >0.35</td></tr><tr><td align="center" valign="middle" >MOL008047</td><td align="center" valign="middle" >Artepillin A</td><td align="center" valign="middle" >68.32</td><td align="center" valign="middle" >0.24</td></tr><tr><td align="center" valign="middle" >MOL008043</td><td align="center" valign="middle" >capillarisin</td><td align="center" valign="middle" >57.56</td><td align="center" valign="middle" >0.31</td></tr><tr><td align="center" valign="middle" >MOL008039</td><td align="center" valign="middle" >Isoarcapillin</td><td align="center" valign="middle" >57.4</td><td align="center" valign="middle" >0.41</td></tr><tr><td align="center" valign="middle" >MOL008046</td><td align="center" valign="middle" >Demethoxycapillarisin</td><td align="center" valign="middle" >52.33</td><td align="center" valign="middle" >0.25</td></tr><tr><td align="center" valign="middle" >MOL000354</td><td align="center" valign="middle" >isorhamnetin</td><td align="center" valign="middle" >49.6</td><td align="center" valign="middle" >0.31</td></tr><tr><td align="center" valign="middle" >MOL004609</td><td align="center" valign="middle" >Areapillin</td><td align="center" valign="middle" >48.96</td><td align="center" valign="middle" >0.41</td></tr><tr><td align="center" valign="middle" >MOL000098</td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >46.43</td><td align="center" valign="middle" >0.28</td></tr><tr><td align="center" valign="middle" >MOL008040</td><td align="center" valign="middle" >Eupalitin</td><td align="center" valign="middle" >46.11</td><td align="center" valign="middle" >0.33</td></tr><tr><td align="center" valign="middle" >MOL008041</td><td align="center" valign="middle" >Eupatolitin</td><td align="center" valign="middle" >42.55</td><td align="center" valign="middle" >0.37</td></tr><tr><td align="center" valign="middle" >MOL005573</td><td align="center" valign="middle" >Genkwanin</td><td align="center" valign="middle" >37.13</td><td align="center" valign="middle" >0.24</td></tr><tr><td align="center" valign="middle" >MOL000358</td><td align="center" valign="middle" >beta-sitosterol</td><td align="center" valign="middle" >36.91</td><td align="center" valign="middle" >0.75</td></tr><tr><td align="center" valign="middle" >MOL007274</td><td align="center" valign="middle" >Skrofulein</td><td align="center" valign="middle" >30.35</td><td align="center" valign="middle" >0.3</td></tr></tbody></table></table-wrap></sec><sec id="s3_3"><title>3.3. Enrichment Analysis</title><p>1775 GO terms were obtained with p.adjust &lt; 0.01, there are 1665 terms of biological process (BP), 24 terms of cell composition (CC) and 86 terms of molecular function (MF), accounting for 93.8%, 1.4% and 4.8% respectively. Then the top 5 BP, CC, MF terms are visualized (<xref ref-type="table" rid="table2">Table 2</xref>, <xref ref-type="fig" rid="fig3">Figure 3</xref>).</p><p>In total, 131 KEGG pathways were significantly enriched (p.adjust &lt; 0.01), and the top 10 were visualized (<xref ref-type="table" rid="table3">Table 3</xref>, <xref ref-type="fig" rid="fig4">Figure 4</xref>), involved in the prostate cancer, hepatitis B, bladder cancer, kaposi sarcoma-associated herpesvirus infection, hepatitis C, AGE-RAGE signaling pathway in diabetic complications, small cell lung cancer, fluid shear stress and atherosclerosis, IL-17 signaling pathway, human cytomegalovirus infection.</p><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Gene Ontology (GO) enrichment</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Ontology</th><th align="center" valign="middle" >ID</th><th align="center" valign="middle" >Description</th><th align="center" valign="middle" >p.adjust</th><th align="center" valign="middle" >Count</th></tr></thead><tr><td align="center" valign="middle" >BP</td><td align="center" valign="middle" >GO:0000302</td><td align="center" valign="middle" >response to reactive oxygen species</td><td align="center" valign="middle" >6.19456E−25</td><td align="center" valign="middle" >27</td></tr><tr><td align="center" valign="middle" >BP</td><td align="center" valign="middle" >GO:0034599</td><td align="center" valign="middle" >cellular response to oxidative stress</td><td align="center" valign="middle" >6.64222E−25</td><td align="center" valign="middle" >29</td></tr><tr><td align="center" valign="middle" >BP</td><td align="center" valign="middle" >GO:0032496</td><td align="center" valign="middle" >response to lipopolysaccharide</td><td align="center" valign="middle" >5.39618E−24</td><td align="center" valign="middle" >29</td></tr><tr><td align="center" valign="middle" >BP</td><td align="center" valign="middle" >GO:0006979</td><td align="center" valign="middle" >response to oxidative stress</td><td align="center" valign="middle" >5.39618E−24</td><td align="center" valign="middle" >32</td></tr><tr><td align="center" valign="middle" >BP</td><td align="center" valign="middle" >GO:0002237</td><td align="center" valign="middle" >response to molecule of bacterial origin</td><td align="center" valign="middle" >1.07768E−23</td><td align="center" valign="middle" >29</td></tr><tr><td align="center" valign="middle" >MF</td><td align="center" valign="middle" >GO:0044389</td><td align="center" valign="middle" >ubiquitin-like protein ligase binding</td><td align="center" valign="middle" >1.00158E−08</td><td align="center" valign="middle" >16</td></tr><tr><td align="center" valign="middle" >MF</td><td align="center" valign="middle" >GO:0005126</td><td align="center" valign="middle" >cytokine receptor binding</td><td align="center" valign="middle" >1.92422E−08</td><td align="center" valign="middle" >15</td></tr><tr><td align="center" valign="middle" >MF</td><td align="center" valign="middle" >GO:0004879</td><td align="center" valign="middle" >nuclear receptor activity</td><td align="center" valign="middle" >2.36334E−08</td><td align="center" valign="middle" >8</td></tr><tr><td align="center" valign="middle" >MF</td><td align="center" valign="middle" >GO:0098531</td><td align="center" valign="middle" >transcription factor activity, direct ligand regulated sequence-specific DNA binding</td><td align="center" valign="middle" >2.36334E−08</td><td align="center" valign="middle" >8</td></tr><tr><td align="center" valign="middle" >MF</td><td align="center" valign="middle" >GO:0005125</td><td align="center" valign="middle" >cytokine activity</td><td align="center" valign="middle" >3.44479E−08</td><td align="center" valign="middle" >13</td></tr><tr><td align="center" valign="middle" >CC</td><td align="center" valign="middle" >GO:0005667</td><td align="center" valign="middle" >transcription factor complex</td><td align="center" valign="middle" >1.72032E−07</td><td align="center" valign="middle" >15</td></tr><tr><td align="center" valign="middle" >CC</td><td align="center" valign="middle" >GO:0000307</td><td align="center" valign="middle" >cyclin-dependent protein kinase holoenzyme complex</td><td align="center" valign="middle" >2.39584E−07</td><td align="center" valign="middle" >7</td></tr><tr><td align="center" valign="middle" >CC</td><td align="center" valign="middle" >GO:1902911</td><td align="center" valign="middle" >protein kinase complex</td><td align="center" valign="middle" >4.47512E−07</td><td align="center" valign="middle" >9</td></tr><tr><td align="center" valign="middle" >CC</td><td align="center" valign="middle" >GO:0045121</td><td align="center" valign="middle" >membrane raft</td><td align="center" valign="middle" >5.05468E−07</td><td align="center" valign="middle" >13</td></tr><tr><td align="center" valign="middle" >CC</td><td align="center" valign="middle" >GO:0098857</td><td align="center" valign="middle" >membrane microdomain</td><td align="center" valign="middle" >5.05468E−07</td><td align="center" valign="middle" >13</td></tr></tbody></table></table-wrap><table-wrap id="table3" ><label><xref ref-type="table" rid="table3">Table 3</xref></label><caption><title> Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >ID</th><th align="center" valign="middle" >Description</th><th align="center" valign="middle" >p.adjust</th><th align="center" valign="middle" >Count</th></tr></thead><tr><td align="center" valign="middle" >hsa05215</td><td align="center" valign="middle" >Prostate cancer</td><td align="center" valign="middle" >9.57346E−25</td><td align="center" valign="middle" >25</td></tr><tr><td align="center" valign="middle" >hsa05161</td><td align="center" valign="middle" >Hepatitis B</td><td align="center" valign="middle" >1.86759E−24</td><td align="center" valign="middle" >29</td></tr><tr><td align="center" valign="middle" >hsa05219</td><td align="center" valign="middle" >Bladder cancer</td><td align="center" valign="middle" >1.12109E−22</td><td align="center" valign="middle" >18</td></tr><tr><td align="center" valign="middle" >hsa05167</td><td align="center" valign="middle" >Kaposi sarcoma-associated herpesvirus infection</td><td align="center" valign="middle" >1.63617E−22</td><td align="center" valign="middle" >29</td></tr><tr><td align="center" valign="middle" >hsa05160</td><td align="center" valign="middle" >Hepatitis C</td><td align="center" valign="middle" >1.63617E−22</td><td align="center" valign="middle" >27</td></tr><tr><td align="center" valign="middle" >hsa04933</td><td align="center" valign="middle" >AGE-RAGE signaling pathway in diabetic complications</td><td align="center" valign="middle" >4.08257E−22</td><td align="center" valign="middle" >23</td></tr><tr><td align="center" valign="middle" >hsa05222</td><td align="center" valign="middle" >Small cell lung cancer</td><td align="center" valign="middle" >4.42098E−20</td><td align="center" valign="middle" >21</td></tr><tr><td align="center" valign="middle" >hsa05418</td><td align="center" valign="middle" >Fluid shear stress and atherosclerosis</td><td align="center" valign="middle" >4.43383E−20</td><td align="center" valign="middle" >24</td></tr><tr><td align="center" valign="middle" >hsa04657</td><td align="center" valign="middle" >IL-17 signaling pathway</td><td align="center" valign="middle" >5.61179E−20</td><td align="center" valign="middle" >21</td></tr><tr><td align="center" valign="middle" >hsa05163</td><td align="center" valign="middle" >Human cytomegalovirus infection</td><td align="center" valign="middle" >1.03173E−19</td><td align="center" valign="middle" >28</td></tr></tbody></table></table-wrap></sec><sec id="s3_4"><title>3.4. PPI Network and Hub Genes</title><p>The PPI network was constructed by STRING at a confidence value of 0.9 and it included 100 nodes and 434 edges (<xref ref-type="fig" rid="fig5">Figure 5</xref>, <xref ref-type="table" rid="table4">Table 4</xref>). Nodes which had high degree were identified as the hub nodes in the PPI network, hub genes with degree ≥ 20 were selected (AKT1, TP53, JUN, MAPK1, TNF, RELA, IL6).</p><table-wrap id="table4" ><label><xref ref-type="table" rid="table4">Table 4</xref></label><caption><title> Topological information of 7 hub targets</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Gene</th><th align="center" valign="middle" >DC</th><th align="center" valign="middle" >BC</th><th align="center" valign="middle" >CC</th></tr></thead><tr><td align="center" valign="middle" >AKT1</td><td align="center" valign="middle" >34</td><td align="center" valign="middle" >1480.8927</td><td align="center" valign="middle" >0.26052633</td></tr><tr><td align="center" valign="middle" >TP53</td><td align="center" valign="middle" >32</td><td align="center" valign="middle" >1257.4023</td><td align="center" valign="middle" >0.2578125</td></tr><tr><td align="center" valign="middle" >JUN</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >932.47144</td><td align="center" valign="middle" >0.26052633</td></tr><tr><td align="center" valign="middle" >MAPK1</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >1087.2823</td><td align="center" valign="middle" >0.25647667</td></tr><tr><td align="center" valign="middle" >TNF</td><td align="center" valign="middle" >27</td><td align="center" valign="middle" >659.35925</td><td align="center" valign="middle" >0.25</td></tr><tr><td align="center" valign="middle" >RELA</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >334.47003</td><td align="center" valign="middle" >0.25</td></tr><tr><td align="center" valign="middle" >IL6</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >522.2917</td><td align="center" valign="middle" >0.24029127</td></tr></tbody></table></table-wrap></sec><sec id="s3_5"><title>3.5. Molecular Docking</title><p>Molecular docking results showed that hub protein targets and active ingredients showed good binding interactions (<xref ref-type="table" rid="table5">Table 5</xref>). Among them, the compound quercetin and MAPK1 displayed the lowest binding energy (−8.9), which suggests that quercetin demonstrated the best docking score against MAPK1 (<xref ref-type="fig" rid="fig6">Figure 6</xref>).</p><table-wrap id="table5" ><label><xref ref-type="table" rid="table5">Table 5</xref></label><caption><title> The binding energy of the hub targets bound to the active ingredients</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Target</th><th align="center" valign="middle" >Ingredient</th><th align="center" valign="middle" >Binding Energy/kJ∙mol<sup>−1</sup></th></tr></thead><tr><td align="center" valign="middle" >AKT1</td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−6.9</td></tr><tr><td align="center" valign="middle" >TP53</td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−7.2</td></tr><tr><td align="center" valign="middle" >JUN</td><td align="center" valign="middle" >beta-sitosterol</td><td align="center" valign="middle" >−7.9</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−8.8</td></tr><tr><td align="center" valign="middle" >MAPK1</td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−8.9</td></tr><tr><td align="center" valign="middle" >TNF</td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−5.2</td></tr><tr><td align="center" valign="middle" >RELA</td><td align="center" valign="middle" >isorhamnetin</td><td align="center" valign="middle" >−7.1</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−7.7</td></tr><tr><td align="center" valign="middle" >IL6</td><td align="center" valign="middle" >quercetin</td><td align="center" valign="middle" >−7.6</td></tr></tbody></table></table-wrap></sec></sec><sec id="s4"><title>4. Discussion</title><p>In this study, a total of 13 active ingredients were obtained from Artemisiae scopariae Herba, including flavonoids, chromones and phytosterols. Flavonoids are well known for their physiological anti-inflammatory and antitumor activities, flavonoids may modulate almost all key processes involved in carcinogenesis including apoptosis, proliferation, angiogenesis and metastatic progression [<xref ref-type="bibr" rid="scirp.111404-ref18">18</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref19">19</xref>] . In recent years, various flavonoids have been recognized as having potential protective activity against artificially induced-liver damage [<xref ref-type="bibr" rid="scirp.111404-ref20">20</xref>] . Chromones have been reported to possess antimicrobial, antiviral, and antitumoral activities and the ability to inhibit several enzymes, it also affects the function and activity of liver-metabolizing enzymes [<xref ref-type="bibr" rid="scirp.111404-ref21">21</xref>] . Phytosterols possess hepatoprotective effect, and the anti-cancer effect of phytosterols are achieved by inhibition of cell cycle progression, promotion of cellular apoptosis, inhibition of cell invasion, migration and adhesion, as well as stimulation of the immune function [<xref ref-type="bibr" rid="scirp.111404-ref22">22</xref>] .</p><p>The PPI network showed that the targets of ASH against LC do not work alone but instead is a complex interconnected network, according to degree value we finally screened out 7 hub genes (AKT1, TP53, JUN, MAPK1, TNF, RELA, IL6). AKT1 belongs to the family of serine/threonine protein kinases (AKT1, AKT2, and AKT3) known as AKT kinases, AKT is closely associated with cell survival, proliferation, apoptosis, migration and angiogenesis in hepatocellular carcinoma (HCC) [<xref ref-type="bibr" rid="scirp.111404-ref23">23</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref24">24</xref>] . AKT1 participates in the initiation, progression and metastasis of malignant tumors, silencing AKT1 significantly stimulated apoptosis and suppressed the cell cycle, whereas increasing AKT1 expression promoted HCC cells proliferation [<xref ref-type="bibr" rid="scirp.111404-ref24">24</xref>] .</p><p>TP53 is the most widely studied tumor suppressor gene, playing an important role in inhibiting tumor development, the function of it is to inhibit cell proliferation in response to DNA damage. By regulating target genes, TP53 induces a variety of cellular responses, including growth arrest, senescence, and apoptosis [<xref ref-type="bibr" rid="scirp.111404-ref25">25</xref>] . JUN encodes c-Jun protein which has essential influence in cell proliferation, survival, and death [<xref ref-type="bibr" rid="scirp.111404-ref26">26</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref27">27</xref>] . Hepatitis C virus infection stimulates c-Jun signaling via protein kinase R to promote proliferation of HCC [<xref ref-type="bibr" rid="scirp.111404-ref27">27</xref>] .</p><p>MAPK1 plays a votal role in cancer progression, especially in cancer metastasis, and in HCC development, simultaneous activation of the MAPK1 pathways has been shown to enhance cell-cycle progression [<xref ref-type="bibr" rid="scirp.111404-ref28">28</xref>] . Tumor necrosis factor (TNF) is a mediator of the acute phase response in the liver and can initiate proliferation and cause cell death in hepatocytes, participates in many forms of hepatic pathology, including ischemia/reperfusion injury, alcoholic and viral hepatitis, and injury by hepatotoxins [<xref ref-type="bibr" rid="scirp.111404-ref29">29</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref30">30</xref>] . Study has shown that TNF-α expression in HCC is significantly higher than that in normal hepatic tissue, positively related with the proliferation and invasion ability of HCC cells [<xref ref-type="bibr" rid="scirp.111404-ref31">31</xref>] .</p><p>RELA, a member of the NF-κB family, work as a potential factor in the onset and progression of cancers through regulating the expression of genes linked to cell proliferation, migration, invasion, etc. [<xref ref-type="bibr" rid="scirp.111404-ref32">32</xref>] [<xref ref-type="bibr" rid="scirp.111404-ref33">33</xref>] . Clinically, RelA expression has been associated with a lower degree of apoptosis and cirrhosis in the livers of patients with hepatitis C, and liver RelA mRNA levels were inversely associated with severe liver damage and mortality [<xref ref-type="bibr" rid="scirp.111404-ref34">34</xref>] . IL-6 is a cytokine produced by various cells serve a key function in the proliferation, apoptosis, recurrence and metastasis of liver cancer cells [<xref ref-type="bibr" rid="scirp.111404-ref35">35</xref>] . High IL6 level linked with patients’ mortality in cirrhotic patients caused by hepatitis B virus and hepatitis C virus infection. Similarly, high serum level of IL6 was associated with liver-related mortality in chronic HCV patients [<xref ref-type="bibr" rid="scirp.111404-ref36">36</xref>] .</p></sec><sec id="s5"><title>5. Conclusion</title><p>In this study, we adopted network pharmacology and molecular docking technology to explore the mechanism of ASH anti-LC. The results indicated that ASH may interact with hub genes such as AKT1, TP53, JUN, etc., regulates hepatitis B, hepatitis C and other signaling pathways, which exerts anticancer effects. Although we lacked experimental validation, it also provides theoretical basis for the treatment of LC in the future.</p></sec><sec id="s6"><title>Acknowledgements</title><p>The study was supported by the Basic Research Foundation of School of Modern College of Humanities and Sciences of Shanxi Normal University (Grant No. 2020JCYJ19).</p></sec><sec id="s7"><title>Conflicts of Interest</title><p>The authors declare no conflicts of interest.</p></sec><sec id="s8"><title>Cite this paper</title><p>Guo, W.H., Zhang, K. and Yang, L.H. (2021) Prediction of the Active Ingredients and Mechanism of ASH against Liver Cancer Based on Network Pharmacology and Molecular Docking. 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